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BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools

Bioinformatics has emerged as an integral part of life sciences and biomedical research. The bioinformatics tools developed so far exist individually and do not cross talk leading biologists to spend more time in formatting the output from one tool as input for another tool. This leads to huge loss...

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Detalles Bibliográficos
Autores principales: Vangala, Rajani Kanth, Singh, Lucky, Gupta, Ravi Prakash
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3400990/
https://www.ncbi.nlm.nih.gov/pubmed/22829746
http://dx.doi.org/10.6026/97320630008639
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author Vangala, Rajani Kanth
Singh, Lucky
Gupta, Ravi Prakash
author_facet Vangala, Rajani Kanth
Singh, Lucky
Gupta, Ravi Prakash
author_sort Vangala, Rajani Kanth
collection PubMed
description Bioinformatics has emerged as an integral part of life sciences and biomedical research. The bioinformatics tools developed so far exist individually and do not cross talk leading biologists to spend more time in formatting the output from one tool as input for another tool. This leads to huge loss of time and cost. We herein have made platform which integrates the tools in a way that the output of one program can be directly used as input of another and does not need any modifications. Tools for similarity search, primer designing, and restriction enzyme digestion are required in almost all biological research; therefore we initially tried to integrate these tools. BioParisodhana platform optimizes the time spend in browsing and downloading applications and is an interactive, effective and user friendly. AVAILABILITY: http://resource.ibab.ac.in/bioparishodhana.html
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spelling pubmed-34009902012-07-24 BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools Vangala, Rajani Kanth Singh, Lucky Gupta, Ravi Prakash Bioinformation Server Bioinformatics has emerged as an integral part of life sciences and biomedical research. The bioinformatics tools developed so far exist individually and do not cross talk leading biologists to spend more time in formatting the output from one tool as input for another tool. This leads to huge loss of time and cost. We herein have made platform which integrates the tools in a way that the output of one program can be directly used as input of another and does not need any modifications. Tools for similarity search, primer designing, and restriction enzyme digestion are required in almost all biological research; therefore we initially tried to integrate these tools. BioParisodhana platform optimizes the time spend in browsing and downloading applications and is an interactive, effective and user friendly. AVAILABILITY: http://resource.ibab.ac.in/bioparishodhana.html Biomedical Informatics 2012-07-06 /pmc/articles/PMC3400990/ /pubmed/22829746 http://dx.doi.org/10.6026/97320630008639 Text en © 2012 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Server
Vangala, Rajani Kanth
Singh, Lucky
Gupta, Ravi Prakash
BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools
title BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools
title_full BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools
title_fullStr BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools
title_full_unstemmed BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools
title_short BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools
title_sort bioparishodhana: a novel graphical interface integrating blast, clustalw, primer3 and restriction digestion tools
topic Server
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3400990/
https://www.ncbi.nlm.nih.gov/pubmed/22829746
http://dx.doi.org/10.6026/97320630008639
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