Cargando…

Advanced Methylome Analysis after Bisulfite Deep Sequencing: An Example in Arabidopsis

Deep sequencing after bisulfite conversion (BS-Seq) is the method of choice to generate whole genome maps of cytosine methylation at single base-pair resolution. Its application to genomic DNA of Arabidopsis flower bud tissue resulted in the first complete methylome, determining a methylation rate o...

Descripción completa

Detalles Bibliográficos
Autores principales:	Dinh, Huy Q., Dubin, Manu, Sedlazeck, Fritz J., Lettner, Nicole, Mittelsten Scheid, Ortrun, von Haeseler, Arndt
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3401099/ https://www.ncbi.nlm.nih.gov/pubmed/22911809 http://dx.doi.org/10.1371/journal.pone.0041528

Ejemplares similares

Polyploidy-associated paramutation in Arabidopsis is determined by small RNAs, temperature, and allele structure
por: Bente, Heinrich, et al.
Publicado: (2021)

Long noncoding RNAs contribute to DNA damage resistance in Arabidopsis thaliana
por: Durut, Nathalie, et al.
Publicado: (2023)

Genetic Rearrangements Can Modify Chromatin Features at Epialleles
por: Foerster, Andrea M., et al.
Publicado: (2011)

Answer to Wang and Luo, "Polyploidization increases meiotic recombination frequency in Arabidopsis: a close look at statistical modelling and data analysis"
por: Pecinka, Ales, et al.
Publicado: (2012)

How a Retrotransposon Exploits the Plant's Heat Stress Response for Its Activation
por: Cavrak, Vladimir V., et al.
Publicado: (2014)

Functional Characterization of SMG7 Paralogs in Arabidopsis thaliana
por: Capitao, Claudio, et al.
Publicado: (2018)

Polyploidization increases meiotic recombination frequency in Arabidopsis
por: Pecinka, Ales, et al.
Publicado: (2011)

Correction: Polyploidization increases meiotic recombination frequency in Arabidopsis
por: Pecinka, Ales, et al.
Publicado: (2012)

Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns
por: Gutzat, Ruben, et al.
Publicado: (2020)

Stress-Induced Chromatin Changes: A Critical View on Their Heritability
por: Pecinka, Ales, et al.
Publicado: (2012)

Epigenetic responses to stress: triple defense?
por: Gutzat, Ruben, et al.
Publicado: (2012)

The Role of Noncoding RNAs in Double-Strand Break Repair
por: Durut, Nathalie, et al.
Publicado: (2019)

Transgenerational Stress Memory Is Not a General Response in Arabidopsis
por: Pecinka, Ales, et al.
Publicado: (2009)

Versatile in vitro assay to recognize Cas9‐induced mutations
por: Bente, Heinrich, et al.
Publicado: (2020)

Under siege: virus control in plant meristems and progeny
por: Bradamante, Gabriele, et al.
Publicado: (2021)

Targeted bisulfite sequencing of the dynamic DNA methylome
por: Ziller, Michael J., et al.
Publicado: (2016)

Imprinting of the Polycomb Group Gene MEDEA Serves as a Ploidy Sensor in Arabidopsis
por: Erilova, Aleksandra, et al.
Publicado: (2009)

Effective, homogeneous and transient interference with cytosine methylation in plant genomic DNA by zebularine
por: Baubec, Tuncay, et al.
Publicado: (2009)

Benefit-of-doubt (BOD) scoring: A sequencing-based method for SNP candidate assessment from high to medium read number data sets
por: Sedlazeck, Fritz Joachim, et al.
Publicado: (2013)

Mapping the zebrafish brain methylome using reduced representation bisulfite sequencing
por: Chatterjee, Aniruddha, et al.
Publicado: (2013)

Highly sensitive targeted methylome sequencing by post-bisulfite adaptor tagging
por: Miura, Fumihito, et al.
Publicado: (2015)

Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs
por: Vesely, Cornelia, et al.
Publicado: (2012)

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data
por: Smolka, Moritz, et al.
Publicado: (2015)

ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain
por: Vesely, Cornelia, et al.
Publicado: (2014)

Droplet-based bisulfite sequencing for high-throughput profiling of single-cell DNA methylomes
por: Zhang, Qiang, et al.
Publicado: (2023)

Droplet-based bisulfite sequencing for high-throughput profiling of single-cell DNA methylomes
por: Zhang, Qiang, et al.
Publicado: (2023)

A CENH3 mutation promotes meiotic exit and restores fertility in SMG7-deficient Arabidopsis
por: Capitao, Claudio, et al.
Publicado: (2021)

SVhound: detection of regions that harbor yet undetected structural variation
por: Paulin, Luis F., et al.
Publicado: (2023)

Decreased expression of endogenous feline leukemia virus in cat lymphomas: a case control study
por: Krunic, Milica, et al.
Publicado: (2015)

Accurate detection of complex structural variations using single molecule sequencing
por: Sedlazeck, Fritz J., et al.
Publicado: (2018)

Single-cell genome-wide bisulfite sequencing uncovers extensive heterogeneity in the mouse liver methylome
por: Gravina, Silvia, et al.
Publicado: (2016)

NGS-based deep bisulfite sequencing
por: Lee, Suman, et al.
Publicado: (2015)

DNA methylome profiling at single-base resolution through bisulfite sequencing of 5mC-immunoprecipitated DNA
por: Jia, Zhen, et al.
Publicado: (2018)

A new approach to decode DNA methylome and genomic variants simultaneously from double strand bisulfite sequencing
por: Liang, Jialong, et al.
Publicado: (2021)

Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions
por: Dumur, Tao, et al.
Publicado: (2019)

Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation
por: Busche, Stephan, et al.
Publicado: (2015)

Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions
por: Schmidt, Martin, et al.
Publicado: (2017)

Whole genome bisulfite sequencing methylome analysis of mulberry (Morus alba) reveals epigenome modifications in response to drought stress
por: Li, Ruixue, et al.
Publicado: (2020)

Phenotypic and Methylome Responses to Salt Stress in Arabidopsis thaliana Natural Accessions
por: Lin, Xiaohe, et al.
Publicado: (2022)

TEA: the epigenome platform for Arabidopsis methylome study
por: Su, Sheng-Yao, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_qgc1h60c0cn823j07e6lkd27as