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Post-hoc selection of dynamic causal models
Dynamic causal modelling (DCM) was originally proposed as a hypothesis driven procedure in which a small number of neurobiologically motivated models are compared. Model comparison in this context usually proceeds by individually fitting each model to data and then approximating the corresponding mo...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier/North-Holland Biomedical Press
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3401996/ https://www.ncbi.nlm.nih.gov/pubmed/22561579 http://dx.doi.org/10.1016/j.jneumeth.2012.04.013 |
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author | Rosa, M.J. Friston, K. Penny, W. |
author_facet | Rosa, M.J. Friston, K. Penny, W. |
author_sort | Rosa, M.J. |
collection | PubMed |
description | Dynamic causal modelling (DCM) was originally proposed as a hypothesis driven procedure in which a small number of neurobiologically motivated models are compared. Model comparison in this context usually proceeds by individually fitting each model to data and then approximating the corresponding model evidence with a free energy bound. However, a recent trend has emerged for comparing very large numbers of models in a more exploratory manner. This led Friston and Penny (2011) to propose a post-hoc approximation to the model evidence, which is computed by optimising only the largest (full) model of a set of models. The evidence for any (reduced) submodel is then obtained using a generalisation of the Savage-Dickey density ratio (Dickey, 1971). The benefit of this post-hoc approach is a huge reduction in the computational time required for model fitting. This is because only a single model is fitted to data, allowing a potentially huge model space to be searched relatively quickly. In this paper, we explore the relationship between the free energy bound and post-hoc approximations to the model evidence in the context of deterministic (bilinear) dynamic causal models (DCMs) for functional magnetic resonance imaging data. |
format | Online Article Text |
id | pubmed-3401996 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Elsevier/North-Holland Biomedical Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-34019962012-07-24 Post-hoc selection of dynamic causal models Rosa, M.J. Friston, K. Penny, W. J Neurosci Methods Computational Neuroscience Dynamic causal modelling (DCM) was originally proposed as a hypothesis driven procedure in which a small number of neurobiologically motivated models are compared. Model comparison in this context usually proceeds by individually fitting each model to data and then approximating the corresponding model evidence with a free energy bound. However, a recent trend has emerged for comparing very large numbers of models in a more exploratory manner. This led Friston and Penny (2011) to propose a post-hoc approximation to the model evidence, which is computed by optimising only the largest (full) model of a set of models. The evidence for any (reduced) submodel is then obtained using a generalisation of the Savage-Dickey density ratio (Dickey, 1971). The benefit of this post-hoc approach is a huge reduction in the computational time required for model fitting. This is because only a single model is fitted to data, allowing a potentially huge model space to be searched relatively quickly. In this paper, we explore the relationship between the free energy bound and post-hoc approximations to the model evidence in the context of deterministic (bilinear) dynamic causal models (DCMs) for functional magnetic resonance imaging data. Elsevier/North-Holland Biomedical Press 2012-06-30 /pmc/articles/PMC3401996/ /pubmed/22561579 http://dx.doi.org/10.1016/j.jneumeth.2012.04.013 Text en © 2012 Elsevier B.V. https://creativecommons.org/licenses/by/3.0/ Open Access under CC BY 3.0 (https://creativecommons.org/licenses/by/3.0/) license |
spellingShingle | Computational Neuroscience Rosa, M.J. Friston, K. Penny, W. Post-hoc selection of dynamic causal models |
title | Post-hoc selection of dynamic causal models |
title_full | Post-hoc selection of dynamic causal models |
title_fullStr | Post-hoc selection of dynamic causal models |
title_full_unstemmed | Post-hoc selection of dynamic causal models |
title_short | Post-hoc selection of dynamic causal models |
title_sort | post-hoc selection of dynamic causal models |
topic | Computational Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3401996/ https://www.ncbi.nlm.nih.gov/pubmed/22561579 http://dx.doi.org/10.1016/j.jneumeth.2012.04.013 |
work_keys_str_mv | AT rosamj posthocselectionofdynamiccausalmodels AT fristonk posthocselectionofdynamiccausalmodels AT pennyw posthocselectionofdynamiccausalmodels |