Cargando…
Increasing the efficiency of digitization workflows for herbarium specimens
Abstract. The New York Botanical Garden Herbarium has been databasing and imaging its estimated 7.3 million plant specimens for the past 17 years. Due to the size of the collection, we have been selectively digitizing fundable subsets of specimens, making successive passes through the herbarium with...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3406470/ https://www.ncbi.nlm.nih.gov/pubmed/22859882 http://dx.doi.org/10.3897/zookeys.209.3125 |
_version_ | 1782239229252730880 |
---|---|
author | Tulig, Melissa Tarnowsky, Nicole Bevans, Michael Anthony Kirchgessner, Thiers, Barbara M. |
author_facet | Tulig, Melissa Tarnowsky, Nicole Bevans, Michael Anthony Kirchgessner, Thiers, Barbara M. |
author_sort | Tulig, Melissa |
collection | PubMed |
description | Abstract. The New York Botanical Garden Herbarium has been databasing and imaging its estimated 7.3 million plant specimens for the past 17 years. Due to the size of the collection, we have been selectively digitizing fundable subsets of specimens, making successive passes through the herbarium with each new grant. With this strategy, the average rate for databasing complete records has been 10 specimens per hour. With 1.3 million specimens databased, this effort has taken about 130,000 hours of staff time. At this rate, to complete the herbarium and digitize the remaining 6 million specimens, another 600,000 hours would be needed. Given the current biodiversity and economic crises, there is neither the time nor money to complete the collection at this rate. Through a combination of grants over the last few years, The New York Botanical Garden has been testing new protocols and tactics for increasing the rate of digitization through combinations of data collaboration, field book digitization, partial data entry and imaging, and optical character recognition (OCR) of specimen images. With the launch of the National Science Foundation’s new Advancing Digitization of Biological Collections program, we hope to move forward with larger, more efficient digitization projects, capturing data from larger portions of the herbarium at a fraction of the cost and time. |
format | Online Article Text |
id | pubmed-3406470 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-34064702012-08-02 Increasing the efficiency of digitization workflows for herbarium specimens Tulig, Melissa Tarnowsky, Nicole Bevans, Michael Anthony Kirchgessner, Thiers, Barbara M. Zookeys Article Abstract. The New York Botanical Garden Herbarium has been databasing and imaging its estimated 7.3 million plant specimens for the past 17 years. Due to the size of the collection, we have been selectively digitizing fundable subsets of specimens, making successive passes through the herbarium with each new grant. With this strategy, the average rate for databasing complete records has been 10 specimens per hour. With 1.3 million specimens databased, this effort has taken about 130,000 hours of staff time. At this rate, to complete the herbarium and digitize the remaining 6 million specimens, another 600,000 hours would be needed. Given the current biodiversity and economic crises, there is neither the time nor money to complete the collection at this rate. Through a combination of grants over the last few years, The New York Botanical Garden has been testing new protocols and tactics for increasing the rate of digitization through combinations of data collaboration, field book digitization, partial data entry and imaging, and optical character recognition (OCR) of specimen images. With the launch of the National Science Foundation’s new Advancing Digitization of Biological Collections program, we hope to move forward with larger, more efficient digitization projects, capturing data from larger portions of the herbarium at a fraction of the cost and time. Pensoft Publishers 2012-07-20 /pmc/articles/PMC3406470/ /pubmed/22859882 http://dx.doi.org/10.3897/zookeys.209.3125 Text en Melissa Tulig, Nicole Tarnowsky, Michael Bevans, Anthony Kirchgessner, Barbara M. Thiers http://creativecommons.org/licenses/by/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Article Tulig, Melissa Tarnowsky, Nicole Bevans, Michael Anthony Kirchgessner, Thiers, Barbara M. Increasing the efficiency of digitization workflows for herbarium specimens |
title | Increasing the efficiency of digitization workflows for herbarium specimens |
title_full | Increasing the efficiency of digitization workflows for herbarium specimens |
title_fullStr | Increasing the efficiency of digitization workflows for herbarium specimens |
title_full_unstemmed | Increasing the efficiency of digitization workflows for herbarium specimens |
title_short | Increasing the efficiency of digitization workflows for herbarium specimens |
title_sort | increasing the efficiency of digitization workflows for herbarium specimens |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3406470/ https://www.ncbi.nlm.nih.gov/pubmed/22859882 http://dx.doi.org/10.3897/zookeys.209.3125 |
work_keys_str_mv | AT tuligmelissa increasingtheefficiencyofdigitizationworkflowsforherbariumspecimens AT tarnowskynicole increasingtheefficiencyofdigitizationworkflowsforherbariumspecimens AT bevansmichael increasingtheefficiencyofdigitizationworkflowsforherbariumspecimens AT anthonykirchgessner increasingtheefficiencyofdigitizationworkflowsforherbariumspecimens AT thiersbarbaram increasingtheefficiencyofdigitizationworkflowsforherbariumspecimens |