Cargando…

TreeSnatcher plus: capturing phylogenetic trees from images

BACKGROUND: Figures of phylogenetic trees are widely used to illustrate the result of evolutionary analyses. However, one cannot easily extract a machine-readable representation from such images. Therefore, new software emerges that helps to preserve phylogenies digitally for future research. RESULT...

Descripción completa

Detalles Bibliográficos
Autores principales:	Laubach, Thomas, von Haeseler, Arndt, Lercher, Martin J
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3411374/ https://www.ncbi.nlm.nih.gov/pubmed/22624611 http://dx.doi.org/10.1186/1471-2105-13-110

Ejemplares similares

ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
por: Fouquier, Jennifer, et al.
Publicado: (2016)

PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees
por: Fang, Yang, et al.
Publicado: (2019)

SILVA tree viewer: interactive web browsing of the SILVA phylogenetic guide trees
por: Beccati, Alan, et al.
Publicado: (2017)

TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics
por: Jobb, Gangolf, et al.
Publicado: (2004)

Taxonomic colouring of phylogenetic trees of protein sequences
por: Palidwor, Gareth, et al.
Publicado: (2006)

Dendroscope: An interactive viewer for large phylogenetic trees
por: Huson, Daniel H, et al.
Publicado: (2007)

YBYRÁ facilitates comparison of large phylogenetic trees
por: Machado, Denis Jacob
Publicado: (2015)

Physcraper: a Python package for continually updated phylogenetic trees using the Open Tree of Life
por: Sánchez-Reyes, Luna L., et al.
Publicado: (2021)

TreeViewJ: An application for viewing and analyzing phylogenetic trees
por: Peterson, Matthew W, et al.
Publicado: (2007)

Treelink: data integration, clustering and visualization of phylogenetic trees
por: Allende, Christian, et al.
Publicado: (2015)

Quartet decomposition server: a platform for analyzing phylogenetic trees
por: Mao, Fenglou, et al.
Publicado: (2012)

PhyloFinder: An intelligent search engine for phylogenetic tree databases
por: Chen, Duhong, et al.
Publicado: (2008)

SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees
por: Hill, Tobias, et al.
Publicado: (2010)

Root Digger: a root placement program for phylogenetic trees
por: Bettisworth, Ben, et al.
Publicado: (2021)

TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses
por: Stöver, Ben C, et al.
Publicado: (2010)

Visualising very large phylogenetic trees in three dimensional hyperbolic space
por: Hughes, Timothy, et al.
Publicado: (2004)

PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees
por: Gouret, Philippe, et al.
Publicado: (2009)

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis
por: Benavente, Ernest D, et al.
Publicado: (2015)

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
por: Lee, Tae-Ho, et al.
Publicado: (2014)

Uphyloplot2: visualizing phylogenetic trees from single-cell RNA-seq data
por: Kurtenbach, Stefan, et al.
Publicado: (2021)

GenNon-h: Generating multiple sequence alignments on nonhomogeneous phylogenetic trees
por: Kedzierska, Anna M, et al.
Publicado: (2012)

PhyloExplorer: a web server to validate, explore and query phylogenetic trees
por: Ranwez, Vincent, et al.
Publicado: (2009)

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
por: Trifinopoulos, Jana, et al.
Publicado: (2016)

Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython
por: Talevich, Eric, et al.
Publicado: (2012)

HGT-Gen: a tool for generating a phylogenetic tree with horizontal gene transfer
por: Horiike, Tokumasa, et al.
Publicado: (2011)

MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation
por: Hoang, Diep Thi, et al.
Publicado: (2018)

Trees and Hierarchical Structures
por: Dress, Andreas, et al.
Publicado: (1990)

TreeDyn: towards dynamic graphics and annotations for analyses of trees
por: Chevenet, François, et al.
Publicado: (2006)

Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
por: Dalevi, Daniel, et al.
Publicado: (2007)

tinselR—an R Shiny Application for Annotating Phylogenetic Trees
por: Hamlin, Jennafer A. P., et al.
Publicado: (2021)

Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement
por: MacLeod, Dave, et al.
Publicado: (2005)

TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images
por: Laruelle, Elise, et al.
Publicado: (2023)

Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree
por: Dib, Linda, et al.
Publicado: (2015)

Analysis of utilitarianism in Stevenson´s short tale “The body snatcher”. /
por: Viñas Oliva, Mariel del Carmen
Publicado: (2018)

TreeRipper web application: towards a fully automated optical tree recognition software
por: Hughes, Joseph
Publicado: (2011)

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
por: Minh, Bui Quang, et al.
Publicado: (2020)

HvrBase++: a phylogenetic database for primate species
por: Kohl, Jochen, et al.
Publicado: (2006)

TreeCmp: Comparison of Trees in Polynomial Time
por: Bogdanowicz, Damian, et al.
Publicado: (2012)

PhyloPen: Phylogenetic Tree Browsing Using a Pen and Touch Interface
por: Wehrer, Anthony, et al.
Publicado: (2015)

primetv: a viewer for reconciled trees
por: Sennblad, Bengt, et al.
Publicado: (2007)

Cannot write session to /tmp/vufind_sessions/sess_falikvhcvmff55j4qdderu09mt