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ChromoHub: a data hub for navigators of chromatin-mediated signalling
Summary: The rapidly increasing research activity focused on chromatin-mediated regulation of epigenetic mechanisms is generating waves of data on writers, readers and erasers of the histone code, such as protein methyltransferases, bromodomains or histone deacetylases. To make these data easily acc...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3413389/ https://www.ncbi.nlm.nih.gov/pubmed/22718786 http://dx.doi.org/10.1093/bioinformatics/bts340 |
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author | Liu, Lihua Zhen, Xi Ting Denton, Emily Marsden, Brian D. Schapira, Matthieu |
author_facet | Liu, Lihua Zhen, Xi Ting Denton, Emily Marsden, Brian D. Schapira, Matthieu |
author_sort | Liu, Lihua |
collection | PubMed |
description | Summary: The rapidly increasing research activity focused on chromatin-mediated regulation of epigenetic mechanisms is generating waves of data on writers, readers and erasers of the histone code, such as protein methyltransferases, bromodomains or histone deacetylases. To make these data easily accessible to communities of research scientists coming from diverse horizons, we have created ChromoHub, an online resource where users can map on phylogenetic trees disease associations, protein structures, chemical inhibitors, histone substrates, chromosomal aberrations and other types of data extracted from public repositories and the published literature. The interface can be used to define the structural or chemical coverage of a protein family, highlight domain architectures, interrogate disease relevance or zoom in on specific genes for more detailed information. This open-access resource should serve as a hub for cell biologists, medicinal chemists, structural biologists and other navigators that explore the biology of chromatin signalling. Availability: http://www.thesgc.org/chromohub/. Contact: matthieu.schapira@utoronto.ca Supplementary Information: Supplementary data are available at Bioinformatics online. |
format | Online Article Text |
id | pubmed-3413389 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-34133892012-08-07 ChromoHub: a data hub for navigators of chromatin-mediated signalling Liu, Lihua Zhen, Xi Ting Denton, Emily Marsden, Brian D. Schapira, Matthieu Bioinformatics Applications Note Summary: The rapidly increasing research activity focused on chromatin-mediated regulation of epigenetic mechanisms is generating waves of data on writers, readers and erasers of the histone code, such as protein methyltransferases, bromodomains or histone deacetylases. To make these data easily accessible to communities of research scientists coming from diverse horizons, we have created ChromoHub, an online resource where users can map on phylogenetic trees disease associations, protein structures, chemical inhibitors, histone substrates, chromosomal aberrations and other types of data extracted from public repositories and the published literature. The interface can be used to define the structural or chemical coverage of a protein family, highlight domain architectures, interrogate disease relevance or zoom in on specific genes for more detailed information. This open-access resource should serve as a hub for cell biologists, medicinal chemists, structural biologists and other navigators that explore the biology of chromatin signalling. Availability: http://www.thesgc.org/chromohub/. Contact: matthieu.schapira@utoronto.ca Supplementary Information: Supplementary data are available at Bioinformatics online. Oxford University Press 2012-08-15 2012-06-19 /pmc/articles/PMC3413389/ /pubmed/22718786 http://dx.doi.org/10.1093/bioinformatics/bts340 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Note Liu, Lihua Zhen, Xi Ting Denton, Emily Marsden, Brian D. Schapira, Matthieu ChromoHub: a data hub for navigators of chromatin-mediated signalling |
title | ChromoHub: a data hub for navigators of chromatin-mediated signalling |
title_full | ChromoHub: a data hub for navigators of chromatin-mediated signalling |
title_fullStr | ChromoHub: a data hub for navigators of chromatin-mediated signalling |
title_full_unstemmed | ChromoHub: a data hub for navigators of chromatin-mediated signalling |
title_short | ChromoHub: a data hub for navigators of chromatin-mediated signalling |
title_sort | chromohub: a data hub for navigators of chromatin-mediated signalling |
topic | Applications Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3413389/ https://www.ncbi.nlm.nih.gov/pubmed/22718786 http://dx.doi.org/10.1093/bioinformatics/bts340 |
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