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ChromoHub: a data hub for navigators of chromatin-mediated signalling

Summary: The rapidly increasing research activity focused on chromatin-mediated regulation of epigenetic mechanisms is generating waves of data on writers, readers and erasers of the histone code, such as protein methyltransferases, bromodomains or histone deacetylases. To make these data easily acc...

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Autores principales: Liu, Lihua, Zhen, Xi Ting, Denton, Emily, Marsden, Brian D., Schapira, Matthieu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3413389/
https://www.ncbi.nlm.nih.gov/pubmed/22718786
http://dx.doi.org/10.1093/bioinformatics/bts340
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author Liu, Lihua
Zhen, Xi Ting
Denton, Emily
Marsden, Brian D.
Schapira, Matthieu
author_facet Liu, Lihua
Zhen, Xi Ting
Denton, Emily
Marsden, Brian D.
Schapira, Matthieu
author_sort Liu, Lihua
collection PubMed
description Summary: The rapidly increasing research activity focused on chromatin-mediated regulation of epigenetic mechanisms is generating waves of data on writers, readers and erasers of the histone code, such as protein methyltransferases, bromodomains or histone deacetylases. To make these data easily accessible to communities of research scientists coming from diverse horizons, we have created ChromoHub, an online resource where users can map on phylogenetic trees disease associations, protein structures, chemical inhibitors, histone substrates, chromosomal aberrations and other types of data extracted from public repositories and the published literature. The interface can be used to define the structural or chemical coverage of a protein family, highlight domain architectures, interrogate disease relevance or zoom in on specific genes for more detailed information. This open-access resource should serve as a hub for cell biologists, medicinal chemists, structural biologists and other navigators that explore the biology of chromatin signalling. Availability: http://www.thesgc.org/chromohub/. Contact: matthieu.schapira@utoronto.ca Supplementary Information: Supplementary data are available at Bioinformatics online.
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spelling pubmed-34133892012-08-07 ChromoHub: a data hub for navigators of chromatin-mediated signalling Liu, Lihua Zhen, Xi Ting Denton, Emily Marsden, Brian D. Schapira, Matthieu Bioinformatics Applications Note Summary: The rapidly increasing research activity focused on chromatin-mediated regulation of epigenetic mechanisms is generating waves of data on writers, readers and erasers of the histone code, such as protein methyltransferases, bromodomains or histone deacetylases. To make these data easily accessible to communities of research scientists coming from diverse horizons, we have created ChromoHub, an online resource where users can map on phylogenetic trees disease associations, protein structures, chemical inhibitors, histone substrates, chromosomal aberrations and other types of data extracted from public repositories and the published literature. The interface can be used to define the structural or chemical coverage of a protein family, highlight domain architectures, interrogate disease relevance or zoom in on specific genes for more detailed information. This open-access resource should serve as a hub for cell biologists, medicinal chemists, structural biologists and other navigators that explore the biology of chromatin signalling. Availability: http://www.thesgc.org/chromohub/. Contact: matthieu.schapira@utoronto.ca Supplementary Information: Supplementary data are available at Bioinformatics online. Oxford University Press 2012-08-15 2012-06-19 /pmc/articles/PMC3413389/ /pubmed/22718786 http://dx.doi.org/10.1093/bioinformatics/bts340 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Liu, Lihua
Zhen, Xi Ting
Denton, Emily
Marsden, Brian D.
Schapira, Matthieu
ChromoHub: a data hub for navigators of chromatin-mediated signalling
title ChromoHub: a data hub for navigators of chromatin-mediated signalling
title_full ChromoHub: a data hub for navigators of chromatin-mediated signalling
title_fullStr ChromoHub: a data hub for navigators of chromatin-mediated signalling
title_full_unstemmed ChromoHub: a data hub for navigators of chromatin-mediated signalling
title_short ChromoHub: a data hub for navigators of chromatin-mediated signalling
title_sort chromohub: a data hub for navigators of chromatin-mediated signalling
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3413389/
https://www.ncbi.nlm.nih.gov/pubmed/22718786
http://dx.doi.org/10.1093/bioinformatics/bts340
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