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Guiding the self-organization of random Boolean networks
Random Boolean networks (RBNs) are models of genetic regulatory networks. It is useful to describe RBNs as self-organizing systems to study how changes in the nodes and connections affect the global network dynamics. This article reviews eight different methods for guiding the self-organization of R...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer-Verlag
2011
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3414703/ https://www.ncbi.nlm.nih.gov/pubmed/22127955 http://dx.doi.org/10.1007/s12064-011-0144-x |
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author | Gershenson, Carlos |
author_facet | Gershenson, Carlos |
author_sort | Gershenson, Carlos |
collection | PubMed |
description | Random Boolean networks (RBNs) are models of genetic regulatory networks. It is useful to describe RBNs as self-organizing systems to study how changes in the nodes and connections affect the global network dynamics. This article reviews eight different methods for guiding the self-organization of RBNs. In particular, the article is focused on guiding RBNs toward the critical dynamical regime, which is near the phase transition between the ordered and dynamical phases. The properties and advantages of the critical regime for life, computation, adaptability, evolvability, and robustness are reviewed. The guidance methods of RBNs can be used for engineering systems with the features of the critical regime, as well as for studying how natural selection evolved living systems, which are also critical. |
format | Online Article Text |
id | pubmed-3414703 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Springer-Verlag |
record_format | MEDLINE/PubMed |
spelling | pubmed-34147032012-08-16 Guiding the self-organization of random Boolean networks Gershenson, Carlos Theory Biosci Original Paper Random Boolean networks (RBNs) are models of genetic regulatory networks. It is useful to describe RBNs as self-organizing systems to study how changes in the nodes and connections affect the global network dynamics. This article reviews eight different methods for guiding the self-organization of RBNs. In particular, the article is focused on guiding RBNs toward the critical dynamical regime, which is near the phase transition between the ordered and dynamical phases. The properties and advantages of the critical regime for life, computation, adaptability, evolvability, and robustness are reviewed. The guidance methods of RBNs can be used for engineering systems with the features of the critical regime, as well as for studying how natural selection evolved living systems, which are also critical. Springer-Verlag 2011-11-30 2012 /pmc/articles/PMC3414703/ /pubmed/22127955 http://dx.doi.org/10.1007/s12064-011-0144-x Text en © The Author(s) 2011 https://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited. |
spellingShingle | Original Paper Gershenson, Carlos Guiding the self-organization of random Boolean networks |
title | Guiding the self-organization of random Boolean networks |
title_full | Guiding the self-organization of random Boolean networks |
title_fullStr | Guiding the self-organization of random Boolean networks |
title_full_unstemmed | Guiding the self-organization of random Boolean networks |
title_short | Guiding the self-organization of random Boolean networks |
title_sort | guiding the self-organization of random boolean networks |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3414703/ https://www.ncbi.nlm.nih.gov/pubmed/22127955 http://dx.doi.org/10.1007/s12064-011-0144-x |
work_keys_str_mv | AT gershensoncarlos guidingtheselforganizationofrandombooleannetworks |