Cargando…

Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling

Genome-wide transcription start site (TSS) profiles of the enterobacteria Escherichia coli and Klebsiella pneumoniae were experimentally determined through modified 5′ RACE followed by deep sequencing of intact primary mRNA. This identified 3,746 and 3,143 TSSs for E. coli and K. pneumoniae, respect...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kim, Donghyuk, Hong, Jay Sung-Joong, Qiu, Yu, Nagarajan, Harish, Seo, Joo-Hyun, Cho, Byung-Kwan, Tsai, Shih-Feng, Palsson, Bernhard Ø.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3415461/ https://www.ncbi.nlm.nih.gov/pubmed/22912590 http://dx.doi.org/10.1371/journal.pgen.1002867

Ejemplares similares

Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features
por: Seo, Joo-Hyun, et al.
Publicado: (2012)

Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655
por: Seo, Sang Woo, et al.
Publicado: (2017)

Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states
por: Cho, Byung-Kwan, et al.
Publicado: (2014)

The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets
por: Gao, Ye, et al.
Publicado: (2023)

The PurR regulon in Escherichia coli K-12 MG1655
por: Cho, Byung-Kwan, et al.
Publicado: (2011)

Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli
por: Seo, Sang Woo, et al.
Publicado: (2015)

Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli
por: Seo, Sang Woo, et al.
Publicado: (2014)

Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing
por: Choe, Donghui, et al.
Publicado: (2022)

Model-driven experimental design workflow expands understanding of regulatory role of Nac in Escherichia coli
por: Park, Joon Young, et al.
Publicado: (2023)

Determining the Control Circuitry of Redox Metabolism at the Genome-Scale
por: Federowicz, Stephen, et al.
Publicado: (2014)

Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655
por: Gao, Ye, et al.
Publicado: (2018)

Functional States of the Genome-Scale Escherichia Coli Transcriptional Regulatory System
por: Gianchandani, Erwin P., et al.
Publicado: (2009)

The Escherichia coli transcriptome mostly consists of independently regulated modules
por: Sastry, Anand V., et al.
Publicado: (2019)

The architecture of ArgR-DNA complexes at the genome-scale in Escherichia coli
por: Cho, Suhyung, et al.
Publicado: (2015)

Synthetic 3′-UTR valves for optimal metabolic flux control in Escherichia coli
por: Choe, Donghui, et al.
Publicado: (2022)

Adaptive laboratory evolution of a genome-reduced Escherichia coli
por: Choe, Donghui, et al.
Publicado: (2019)

Inactivation of a Mismatch-Repair System Diversifies Genotypic Landscape of Escherichia coli During Adaptive Laboratory Evolution
por: Kang, Minjeong, et al.
Publicado: (2019)

The Effect of Mobile Element IS10 on Experimental Regulatory Evolution in Escherichia coli
por: Stoebel, Daniel M., et al.
Publicado: (2010)

Elucidating the Regulatory Elements for Transcription Termination and Posttranscriptional Processing in the Streptomyces clavuligerus Genome
por: Hwang, Soonkyu, et al.
Publicado: (2021)

Genome-scale analysis of genetic regulatory elements in Streptomyces avermitilis MA-4680 using transcript boundary information
por: Lee, Yongjae, et al.
Publicado: (2022)

Elucidation of Regulatory Modes for Five Two-Component Systems in Escherichia coli Reveals Novel Relationships
por: Choudhary, Kumari Sonal, et al.
Publicado: (2020)

Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome
por: Hwang, Soonkyu, et al.
Publicado: (2019)

Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo
por: Gao, Ye, et al.
Publicado: (2021)

Regulatory elements coordinating initiation of chromosome replication to the Escherichia coli cell cycle
por: Knöppel, Anna, et al.
Publicado: (2023)

Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP
por: Kim, Donghyuk, et al.
Publicado: (2018)

Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions
por: Edwards, Jeremy S, et al.
Publicado: (2000)

System-Level Analysis of Transcriptional and Translational Regulatory Elements in Streptomyces griseus
por: Hwang, Soonkyu, et al.
Publicado: (2022)

Genetic context effects can override canonical cis regulatory elements in Escherichia coli
por: Scholz, Scott A, et al.
Publicado: (2022)

Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli
por: McCloskey, Douglas, et al.
Publicado: (2013)

Neonatal septicaemia caused by diverse clones of Klebsiella pneumoniae & Escherichia coli harbouring bla(CTX-M-15)
por: Roy, Subhasree, et al.
Publicado: (2013)

Gap-filling analysis of the iJO1366 Escherichia coli metabolic network reconstruction for discovery of metabolic functions
por: Orth, Jeffrey D, et al.
Publicado: (2012)

2407. Emerging Piperacillin/Tazobactam Resistance in Escherichia coli and Klebsiella sp.
por: Suseno, Mira, et al.
Publicado: (2018)

Comparison of Escherichia coli and Klebsiella pneumoniae Acute Pyelonephritis in Korean Patients
por: Hyun, Miri, et al.
Publicado: (2019)

ESBL‐production in Escherichia coli and Klebsiella pneumoniae isolates from Nigeria
por: Hertz, Frederik B., et al.
Publicado: (2019)

Rapid Detection of Piperacillin-Tazobactam Resistance in Klebsiella pneumoniae and Escherichia coli
por: Ortiz de la Rosa, José Manuel, et al.
Publicado: (2023)

Engineered reporter phages for detection of Escherichia coli, Enterococcus, and Klebsiella in urine
por: Meile, Susanne, et al.
Publicado: (2023)

The y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function
por: Ghatak, Sankha, et al.
Publicado: (2019)

Regulatory mechanisms of lipopolysaccharide synthesis in Escherichia coli
por: Shu, Sheng, et al.
Publicado: (2022)

In vitro selection of resistance in Escherichia coli and Klebsiella spp. at in vivo fluoroquinolone concentrations
por: Drago, Lorenzo, et al.
Publicado: (2010)

Class 1 Integrons in Resistant Escherichia coli and Klebsiella spp., US Hospitals
por: Rao, Aarati N., et al.
Publicado: (2006)

Cannot write session to /tmp/vufind_sessions/sess_moh278m93ls896p4pn36qoollb