Cargando…

Imputation of Microsatellite Alleles from Dense SNP Genotypes for Parental Verification

Microsatellite (MS) markers have recently been used for parental verification and are still the international standard despite higher cost, error rate, and turnaround time compared with Single Nucleotide Polymorphisms (SNP)-based assays. Despite domestic and international interest from producers and...

Descripción completa

Detalles Bibliográficos
Autores principales:	McClure, Matthew, Sonstegard, Tad, Wiggans, George, Van Tassell, Curtis P
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Research Foundation 2012
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3418578/ https://www.ncbi.nlm.nih.gov/pubmed/22912645 http://dx.doi.org/10.3389/fgene.2012.00140

Ejemplares similares

Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds
por: McClure, Matthew C., et al.
Publicado: (2013)

Design of a Bovine Low-Density SNP Array Optimized for Imputation
por: Boichard, Didier, et al.
Publicado: (2012)

A Genetic Investigation of Island Jersey Cattle, the Foundation of the Jersey Breed: Comparing Population Structure and Selection to Guernsey, Holstein, and United States Jersey Cattle
por: Huson, Heather J., et al.
Publicado: (2020)

Bovine Exome Sequence Analysis and Targeted SNP Genotyping of Recessive Fertility Defects BH1, HH2, and HH3 Reveal a Putative Causative Mutation in SMC2 for HH3
por: McClure, Matthew C., et al.
Publicado: (2014)

SNP Data Quality Control in a National Beef and Dairy Cattle System and Highly Accurate SNP Based Parentage Verification and Identification
por: McClure, Matthew C., et al.
Publicado: (2018)

Assessment of autozygosity in Nellore cows (Bos indicus) through high-density SNP genotypes
por: Zavarez, Ludmilla B., et al.
Publicado: (2015)

Accuracy of genotype imputation in Nelore cattle
por: Carvalheiro, Roberto, et al.
Publicado: (2014)

The Relationship between Runs of Homozygosity and Inbreeding in Jersey Cattle under Selection
por: Kim, Eui-Soo, et al.
Publicado: (2015)

Comparison of Genotype Imputation for SNP Array and Low-Coverage Whole-Genome Sequencing Data
por: Deng, Tianyu, et al.
Publicado: (2022)

SNP imputation bias reduces effect size determination
por: Khankhanian, Pouya, et al.
Publicado: (2015)

Box–Cox Transformation and Random Regression Models for Fecal egg Count Data
por: da Silva, Marcos Vinícius Gualberto Barbosa, et al.
Publicado: (2012)

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
por: Porto-Neto, Laercio R, et al.
Publicado: (2013)

Replacement of microsatellite markers by imputed medium-density SNP arrays for parentage control in German warmblood horses
por: Nolte, Wietje, et al.
Publicado: (2022)

Development and Characterization of a High Density SNP Genotyping Assay for Cattle
por: Matukumalli, Lakshmi K., et al.
Publicado: (2009)

Impact of pre-imputation SNP-filtering on genotype imputation results
por: Roshyara, Nab Raj, et al.
Publicado: (2014)

Reducing Bias of Allele Frequency Estimates by Modeling SNP Genotype Data with Informative Missingness
por: Lin, Wan-Yu, et al.
Publicado: (2012)

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array
por: Hou, Yali, et al.
Publicado: (2012)

Genome-wide association study and ancestral origins of the slick-hair coat in tropically adapted cattle
por: Huson, Heather J., et al.
Publicado: (2014)

Whole genome SNP genotype piecemeal imputation
por: Wang, Yining, et al.
Publicado: (2015)

Imputation of TPMT defective alleles for the identification of patients with high-risk phenotypes
por: Almoguera, Berta, et al.
Publicado: (2014)

Population Genomic Structure and Genome-Wide Linkage Disequilibrium in Farmed Atlantic Salmon (Salmo salar L.) Using Dense SNP Genotypes
por: Barria, Agustin, et al.
Publicado: (2018)

Fast accurate missing SNP genotype local imputation
por: Wang, Yining, et al.
Publicado: (2012)

Methods of tagSNP selection and other variables affecting imputation accuracy in swine
por: Badke, Yvonne M, et al.
Publicado: (2013)

Effect of Artificial Selection on Runs of Homozygosity in U.S. Holstein Cattle
por: Kim, Eui-Soo, et al.
Publicado: (2013)

Exploring the optimal strategy of imputation from SNP array to whole-genome sequencing data in farm animals
por: Jiang, Yifan, et al.
Publicado: (2022)

Evaluation of low-density SNP panels and imputation for cost-effective genomic selection in four aquaculture species
por: Kriaridou, Christina, et al.
Publicado: (2023)

Prioritizing animals for dense genotyping in order to impute missing genotypes of sparsely genotyped animals
por: Yu, Xijiang, et al.
Publicado: (2014)

Fine Mapping for Weaver Syndrome in Brown Swiss Cattle and the Identification of 41 Concordant Mutations across NRCAM, PNPLA8 and CTTNBP2
por: McClure, Matthew, et al.
Publicado: (2013)

Statistical Methods Revisited for Estimating Daily Milk Yields: How Well do They Work?
por: Wu, Xiao-Lin, et al.
Publicado: (2022)

Does modeling causal relationships improve the accuracy of predicting lactation milk yields?
por: Wu, Xiao-Lin, et al.
Publicado: (2023)

Genome changes due to artificial selection in U.S. Holstein cattle
por: Ma, Li, et al.
Publicado: (2019)

Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip
por: More, Manuel, et al.
Publicado: (2019)

Optimizing Selection of the Reference Population for Genotype Imputation From Array to Sequence Variants
por: Butty, Adrien M., et al.
Publicado: (2019)

Inference of Ancestries and Heterozygosity Proportion and Genotype Imputation in West African Cattle Populations
por: Gebrehiwot, Netsanet Z., et al.
Publicado: (2021)

Genomic Prediction Based on SNP Functional Annotation Using Imputed Whole-Genome Sequence Data in Korean Hanwoo Cattle
por: Lopez, Bryan Irvine M., et al.
Publicado: (2021)

Daily milk yield correction factors: What are they?
por: Wu, Xiao-Lin, et al.
Publicado: (2022)

Development of SNP-Based Genomic Tools for the Canadian Bison Industry: Parentage Verification and Subspecies Composition
por: Yang, Tianfu, et al.
Publicado: (2020)

A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes
por: Hickey, John M, et al.
Publicado: (2011)

Effect of sample stratification on dairy GWAS results
por: Ma, Li, et al.
Publicado: (2012)

Signatures of Selection for Environmental Adaptation and Zebu × Taurine Hybrid Fitness in East African Shorthorn Zebu
por: Bahbahani, Hussain, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_5uivm1mg2fcshimka69pmqqaha