Cargando…

Limitations of the rhesus macaque draft genome assembly and annotation

Finished genome sequences and assemblies are available for only a few vertebrates. Thus, investigators studying many species must rely on draft genomes. Using the rhesus macaque as an example, we document the effects of sequencing errors, gaps in sequence and misassemblies on one automated gene mode...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhang, Xiongfei, Goodsell, Joel, Norgren,, Robert B
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Correspondence
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3426473/ https://www.ncbi.nlm.nih.gov/pubmed/22646658 http://dx.doi.org/10.1186/1471-2164-13-206

Ejemplares similares

A new rhesus macaque assembly and annotation for next-generation sequencing analyses
por: Zimin, Aleksey V, et al.
Publicado: (2014)

Advantages of an Improved Rhesus Macaque Genome for Evolutionary Analyses
por: Gradnigo, Julien S., et al.
Publicado: (2016)

Intercenter reliability and validity of the rhesus macaque GeneChip
por: Duan, Fenghai, et al.
Publicado: (2007)

Gene targeting in adult rhesus macaque fibroblasts
por: Meehan, Daniel T, et al.
Publicado: (2008)

Evolutionary Interrogation of Human Biology in Well-Annotated Genomic Framework of Rhesus Macaque
por: Zhang, Shi-Jian, et al.
Publicado: (2014)

Exome screening to identify loss-of-function mutations in the rhesus macaque for development of preclinical models of human disease
por: Cornish, Adam S., et al.
Publicado: (2016)

High-density rhesus macaque oligonucleotide microarray design using early-stage rhesus genome sequence information and human genome annotations
por: Wallace, James C, et al.
Publicado: (2007)

A novel model of drug cue-induced behaviours in rhesus macaque subjected to chronic ketamine exposure
por: Qin, Meng, et al.
Publicado: (2023)

Assessment and improvement of Indian‐origin rhesus macaque and Mauritian‐origin cynomolgus macaque genome annotations using deep transcriptome sequencing data
por: Peng, Xinxia, et al.
Publicado: (2014)

Preliminary Studies on Immune Response and Viral Pathogenesis of Zika Virus in Rhesus Macaques
por: Woollard, Shawna M., et al.
Publicado: (2018)

Assembly of novel microbial genomes from gut metagenomes of rhesus macaque (Macaca mulatta)
por: Yang, Shengzhi, et al.
Publicado: (2023)

Annotation and functional clustering of circRNA expression in rhesus macaque brain during aging
por: Xu, Kaiyu, et al.
Publicado: (2018)

Genomic resources for rhesus macaques (Macaca mulatta)
por: Rogers, Jeffrey
Publicado: (2022)

Structure and Diversity of the Rhesus Macaque Immunoglobulin Loci through Multiple De Novo Genome Assemblies
por: Ramesh, Akshaya, et al.
Publicado: (2017)

RhesusBase PopGateway: Genome-Wide Population Genetics Atlas in Rhesus Macaque
por: Zhong, Xiaoming, et al.
Publicado: (2016)

Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants
por: He, Yaoxi, et al.
Publicado: (2019)

Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain
por: Liu, Siling, et al.
Publicado: (2017)

Single nucleotide polymorphisms (SNPs) distinguish Indian-origin and Chinese-origin rhesus macaques (Macaca mulatta)
por: Ferguson, Betsy, et al.
Publicado: (2007)

Neonatal Imitation in Rhesus Macaques
por: Ferrari, Pier F, et al.
Publicado: (2006)

Ambiguity Aversion in Rhesus Macaques
por: Hayden, Benjamin Y., et al.
Publicado: (2010)

Draft Genome Sequences of Six Enterohepatic Helicobacter Species Isolated from Humans and One from Rhesus Macaques
por: Shen, Zeli, et al.
Publicado: (2014)

Clonal tracking of erythropoiesis in rhesus macaques
por: Fan, Xing, et al.
Publicado: (2020)

SIV/SHIV-Zika co-infection does not alter disease pathogenesis in adult non-pregnant rhesus macaque model
por: Bidokhti, Mehdi R. M., et al.
Publicado: (2018)

Data on draft genome assembly and annotation of Haloxylon salicornicum Moq.
por: Al Salameen, Fadila, et al.
Publicado: (2021)

Assisted reproductive technologies in rhesus macaques
por: Wolf, Don P
Publicado: (2004)

The mosaic of KIR haplotypes in rhesus macaques
por: Blokhuis, Jeroen H., et al.
Publicado: (2010)

Natural Norovirus Infections in Rhesus Macaques
por: Farkas, Tibor
Publicado: (2016)

Automated face recognition of rhesus macaques
por: Witham, Claire L.
Publicado: (2018)

Mathematical Modeling of Rhesus Cytomegalovirus Transplacental Transmission in Seronegative Rhesus Macaques
por: Gong, Yishu, et al.
Publicado: (2023)

Assembly and Annotation of a Draft Genome of the Medicinal Plant Polygonum cuspidatum
por: Zhang, Yonghong, et al.
Publicado: (2019)

The rhesus macaque as a success story of the Anthropocene
por: Cooper, Eve B, et al.
Publicado: (2022)

The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences
por: Xue, Cheng, et al.
Publicado: (2016)

Focusing antibody responses to the fusion peptide in rhesus macaques
por: Cottrell, Christopher A., et al.
Publicado: (2023)

Evaluation of Rhesus Macaque Models for Cerebral Palsy
por: Zhu, Yong, et al.
Publicado: (2022)

Malaria disrupts the rhesus macaque gut microbiome
por: Farinella, Danielle N., et al.
Publicado: (2023)

Differential efficiencies to neutralize the novel mutants B.1.1.7 and 501Y.V2 by collected sera from convalescent COVID-19 patients and RBD nanoparticle-vaccinated rhesus macaques
por: Li, Rong, et al.
Publicado: (2021)

Limited impact of fingolimod treatment during the initial weeks of ART in SIV-infected rhesus macaques
por: Pino, Maria, et al.
Publicado: (2022)

Identification of novel homologous microRNA genes in the rhesus macaque genome
por: Yue, Junming, et al.
Publicado: (2008)

MamuSNP: A Resource for Rhesus Macaque (Macaca mulatta) Genomics
por: Malhi, Ripan S., et al.
Publicado: (2007)

Mayaro virus pathogenesis and immunity in rhesus macaques
por: Weber, Whitney C., et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_ssg2m93r1fe8snn68d7mmog3qf