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Integrative structural modeling with small angle X-ray scattering profiles

Recent technological advances enabled high-throughput collection of Small Angle X-ray Scattering (SAXS) profiles of biological macromolecules. Thus, computational methods for integrating SAXS profiles into structural modeling are needed more than ever. Here, we review specifically the use of SAXS pr...

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Detalles Bibliográficos
Autores principales: Schneidman-Duhovny, Dina, Kim, Seung Joong, Sali, Andrej
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3427135/
https://www.ncbi.nlm.nih.gov/pubmed/22800408
http://dx.doi.org/10.1186/1472-6807-12-17
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author Schneidman-Duhovny, Dina
Kim, Seung Joong
Sali, Andrej
author_facet Schneidman-Duhovny, Dina
Kim, Seung Joong
Sali, Andrej
author_sort Schneidman-Duhovny, Dina
collection PubMed
description Recent technological advances enabled high-throughput collection of Small Angle X-ray Scattering (SAXS) profiles of biological macromolecules. Thus, computational methods for integrating SAXS profiles into structural modeling are needed more than ever. Here, we review specifically the use of SAXS profiles for the structural modeling of proteins, nucleic acids, and their complexes. First, the approaches for computing theoretical SAXS profiles from structures are presented. Second, computational methods for predicting protein structures, dynamics of proteins in solution, and assembly structures are covered. Third, we discuss the use of SAXS profiles in integrative structure modeling approaches that depend simultaneously on several data types.
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spelling pubmed-34271352012-08-27 Integrative structural modeling with small angle X-ray scattering profiles Schneidman-Duhovny, Dina Kim, Seung Joong Sali, Andrej BMC Struct Biol Review Recent technological advances enabled high-throughput collection of Small Angle X-ray Scattering (SAXS) profiles of biological macromolecules. Thus, computational methods for integrating SAXS profiles into structural modeling are needed more than ever. Here, we review specifically the use of SAXS profiles for the structural modeling of proteins, nucleic acids, and their complexes. First, the approaches for computing theoretical SAXS profiles from structures are presented. Second, computational methods for predicting protein structures, dynamics of proteins in solution, and assembly structures are covered. Third, we discuss the use of SAXS profiles in integrative structure modeling approaches that depend simultaneously on several data types. BioMed Central 2012-07-16 /pmc/articles/PMC3427135/ /pubmed/22800408 http://dx.doi.org/10.1186/1472-6807-12-17 Text en Copyright ©2012 Schneidman-Duhovny et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review
Schneidman-Duhovny, Dina
Kim, Seung Joong
Sali, Andrej
Integrative structural modeling with small angle X-ray scattering profiles
title Integrative structural modeling with small angle X-ray scattering profiles
title_full Integrative structural modeling with small angle X-ray scattering profiles
title_fullStr Integrative structural modeling with small angle X-ray scattering profiles
title_full_unstemmed Integrative structural modeling with small angle X-ray scattering profiles
title_short Integrative structural modeling with small angle X-ray scattering profiles
title_sort integrative structural modeling with small angle x-ray scattering profiles
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3427135/
https://www.ncbi.nlm.nih.gov/pubmed/22800408
http://dx.doi.org/10.1186/1472-6807-12-17
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