Cargando…

Genome-wide identification of significant aberrations in cancer genome

BACKGROUND: Somatic Copy Number Alterations (CNAs) in human genomes are present in almost all human cancers. Systematic efforts to characterize such structural variants must effectively distinguish significant consensus events from random background aberrations. Here we introduce Significant Aberrat...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yuan, Xiguo, Yu, Guoqiang, Hou, Xuchu, Shih, Ie-Ming, Clarke, Robert, Zhang, Junying, Hoffman, Eric P, Wang, Roger R, Zhang, Zhen, Wang, Yue
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3428679/ https://www.ncbi.nlm.nih.gov/pubmed/22839576 http://dx.doi.org/10.1186/1471-2164-13-342

Ejemplares similares

Knowledge-guided multi-scale independent component analysis for biomarker identification
por: Chen, Li, et al.
Publicado: (2008)

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks
por: Tian, Ye, et al.
Publicado: (2014)

FHSA-SED: Two-Locus Model Detection for Genome-Wide Association Study with Harmony Search Algorithm
por: Tuo, Shouheng, et al.
Publicado: (2016)

Estimation of a significance threshold for genome-wide association studies
por: Kaler, Avjinder S., et al.
Publicado: (2019)

Genome-wide identification of microsatellites in white clover (Trifolium repens L.) using FIASCO and phpSSRMiner
por: Zhang, Yan, et al.
Publicado: (2008)

Comparative Analysis of Methods for Identifying Recurrent Copy Number Alterations in Cancer
por: Yuan, Xiguo, et al.
Publicado: (2012)

Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis
por: Liu, Chun-Chi, et al.
Publicado: (2007)

Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array
por: Naeem, Haroon, et al.
Publicado: (2014)

Deep mixed model for marginal epistasis detection and population stratification correction in genome-wide association studies
por: Wang, Haohan, et al.
Publicado: (2019)

An Analysis Pipeline for Genome-wide Association Studies
por: Stefanov, Stefan, et al.
Publicado: (2008)

RiTE database: a resource database for genus-wide rice genomics and evolutionary biology
por: Copetti, Dario, et al.
Publicado: (2015)

Region-based interaction detection in genome-wide case-control studies
por: Zhang, Sen, et al.
Publicado: (2019)

Methods and results from the genome-wide association group at GAW20
por: Wang, Xuexia, et al.
Publicado: (2018)

Development of genome-wide polymorphic microsatellite markers for Trichinella spiralis
por: Li, Ting-Ting, et al.
Publicado: (2020)

Genome-wide methylation data mirror ancestry information
por: Rahmani, Elior, et al.
Publicado: (2017)

Identification of Differentially Evolved Genes: An Alternative Approach to Detection of Accelerated Molecular Evolution from Genome-Wide Comparative Data
por: Kim, Kyu-Won, et al.
Publicado: (2013)

Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computational genomic analysis
por: Jolly, Emmitt R, et al.
Publicado: (2005)

caBIG™ VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data
por: Zhu, Yitan, et al.
Publicado: (2008)

Improved Statistical Analysis for Array CGH-Based DNA Copy Number Aberrations
por: Jiang, Hongmei, et al.
Publicado: (2011)

TAGCNA: A Method to Identify Significant Consensus Events of Copy Number Alterations in Cancer
por: Yuan, Xiguo, et al.
Publicado: (2012)

Estimating genome-wide DNA methylation heterogeneity with methylation patterns
por: Lin, Pei-Yu, et al.
Publicado: (2023)

Comparative analysis of methods for detecting interacting loci
por: Chen, Li, et al.
Publicado: (2011)

A variational Bayes algorithm for fast and accurate multiple locus genome-wide association analysis
por: Logsdon, Benjamin A, et al.
Publicado: (2010)

‘MicroRNA Targets’, a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana
por: Bülow, Lorenz, et al.
Publicado: (2012)

Identification of oncogenic driver mutations by genome-wide CRISPR-Cas9 dropout screening
por: Kiessling, Michael K., et al.
Publicado: (2016)

CINdex: A Bioconductor Package for Analysis of Chromosome Instability in DNA Copy Number Data
por: Song, Lei, et al.
Publicado: (2017)

Mapping genome-wide transcription factor binding sites in frozen tissues
por: Savic, Daniel, et al.
Publicado: (2013)

Enrichment of statistical power for genome-wide association studies
por: Li, Meng, et al.
Publicado: (2014)

Genome-Wide Identification of Somatic Aberrations from Paired Normal-Tumor Samples
por: Li, Ao, et al.
Publicado: (2014)

Targeted identification of TE insertions in a Drosophila genome through hemi-specific PCR
por: Zhang, Shuo, et al.
Publicado: (2017)

Robust methods for population stratification in genome wide association studies
por: Liu, Li, et al.
Publicado: (2013)

Mixture SNPs effect on phenotype in genome-wide association studies
por: Wang, Ling, et al.
Publicado: (2015)

On detection and assessment of statistical significance of Genomic Islands
por: Chatterjee, Raghunath, et al.
Publicado: (2008)

Restriction Landmark Genomic Scanning (RLGS) spot identification by second generation virtual RLGS in multiple genomes with multiple enzyme combinations
por: Smiraglia, Dominic J, et al.
Publicado: (2007)

Power estimation and sample size determination for replication studies of genome-wide association studies
por: Jiang, Wei, et al.
Publicado: (2016)

Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants
por: Conte, Matthieu G, et al.
Publicado: (2008)

AluScan: a method for genome-wide scanning of sequence and structure variations in the human genome
por: Mei, Lingling, et al.
Publicado: (2011)

Detection of genome-wide polymorphisms in the AT-rich Plasmodium falciparum genome using a high-density microarray
por: Jiang, Hongying, et al.
Publicado: (2008)

De novo identification of differentially methylated regions in the human genome
por: Peters, Timothy J, et al.
Publicado: (2015)

Multi-targeted priming for genome-wide gene expression assays
por: Adomas, Aleksandra B, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_pja3fv5cmqe4qf370q0lfibnp3