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Direct Observation of Protein Microcrystals in Crystallization Buffer by Atmospheric Scanning Electron Microscopy

X-ray crystallography requires high quality crystals above a given size. This requirement not only limits the proteins to be analyzed, but also reduces the speed of the structure determination. Indeed, the tertiary structures of many physiologically important proteins remain elusive because of the s...

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Autores principales: Maruyama, Yuusuke, Ebihara, Tatsuhiko, Nishiyama, Hidetoshi, Konyuba, Yuji, Senda, Miki, Numaga-Tomita, Takuro, Senda, Toshiya, Suga, Mitsuo, Sato, Chikara
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Molecular Diversity Preservation International (MDPI) 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431877/
https://www.ncbi.nlm.nih.gov/pubmed/22949879
http://dx.doi.org/10.3390/ijms130810553
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author Maruyama, Yuusuke
Ebihara, Tatsuhiko
Nishiyama, Hidetoshi
Konyuba, Yuji
Senda, Miki
Numaga-Tomita, Takuro
Senda, Toshiya
Suga, Mitsuo
Sato, Chikara
author_facet Maruyama, Yuusuke
Ebihara, Tatsuhiko
Nishiyama, Hidetoshi
Konyuba, Yuji
Senda, Miki
Numaga-Tomita, Takuro
Senda, Toshiya
Suga, Mitsuo
Sato, Chikara
author_sort Maruyama, Yuusuke
collection PubMed
description X-ray crystallography requires high quality crystals above a given size. This requirement not only limits the proteins to be analyzed, but also reduces the speed of the structure determination. Indeed, the tertiary structures of many physiologically important proteins remain elusive because of the so-called “crystallization bottleneck”. Once microcrystals have been obtained, crystallization conditions can be optimized to produce bigger and better crystals. However, the identification of microcrystals can be difficult due to the resolution limit of optical microscopy. Electron microscopy has sometimes been utilized instead, with the disadvantage that the microcrystals usually must be observed in vacuum, which precludes the usage for crystal screening. The atmospheric scanning electron microscope (ASEM) allows samples to be observed in solution. Here, we report the use of this instrument in combination with a special thin-membrane dish with a crystallization well. It was possible to observe protein crystals of lysozyme, lipase B and a histone chaperone TAF-Iβ in crystallization buffers, without the use of staining procedures. The smallest crystals observed with ASEM were a few μm in width, and ASEM can be used with non-transparent solutions. Furthermore, the growth of salt crystals could be monitored in the ASEM, and the difference in contrast between salt and protein crystals made it easy to distinguish between these two types of microcrystals. These results indicate that the ASEM could be an important new tool for the screening of protein microcrystals.
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spelling pubmed-34318772012-09-04 Direct Observation of Protein Microcrystals in Crystallization Buffer by Atmospheric Scanning Electron Microscopy Maruyama, Yuusuke Ebihara, Tatsuhiko Nishiyama, Hidetoshi Konyuba, Yuji Senda, Miki Numaga-Tomita, Takuro Senda, Toshiya Suga, Mitsuo Sato, Chikara Int J Mol Sci Article X-ray crystallography requires high quality crystals above a given size. This requirement not only limits the proteins to be analyzed, but also reduces the speed of the structure determination. Indeed, the tertiary structures of many physiologically important proteins remain elusive because of the so-called “crystallization bottleneck”. Once microcrystals have been obtained, crystallization conditions can be optimized to produce bigger and better crystals. However, the identification of microcrystals can be difficult due to the resolution limit of optical microscopy. Electron microscopy has sometimes been utilized instead, with the disadvantage that the microcrystals usually must be observed in vacuum, which precludes the usage for crystal screening. The atmospheric scanning electron microscope (ASEM) allows samples to be observed in solution. Here, we report the use of this instrument in combination with a special thin-membrane dish with a crystallization well. It was possible to observe protein crystals of lysozyme, lipase B and a histone chaperone TAF-Iβ in crystallization buffers, without the use of staining procedures. The smallest crystals observed with ASEM were a few μm in width, and ASEM can be used with non-transparent solutions. Furthermore, the growth of salt crystals could be monitored in the ASEM, and the difference in contrast between salt and protein crystals made it easy to distinguish between these two types of microcrystals. These results indicate that the ASEM could be an important new tool for the screening of protein microcrystals. Molecular Diversity Preservation International (MDPI) 2012-08-22 /pmc/articles/PMC3431877/ /pubmed/22949879 http://dx.doi.org/10.3390/ijms130810553 Text en © 2012 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0 This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Article
Maruyama, Yuusuke
Ebihara, Tatsuhiko
Nishiyama, Hidetoshi
Konyuba, Yuji
Senda, Miki
Numaga-Tomita, Takuro
Senda, Toshiya
Suga, Mitsuo
Sato, Chikara
Direct Observation of Protein Microcrystals in Crystallization Buffer by Atmospheric Scanning Electron Microscopy
title Direct Observation of Protein Microcrystals in Crystallization Buffer by Atmospheric Scanning Electron Microscopy
title_full Direct Observation of Protein Microcrystals in Crystallization Buffer by Atmospheric Scanning Electron Microscopy
title_fullStr Direct Observation of Protein Microcrystals in Crystallization Buffer by Atmospheric Scanning Electron Microscopy
title_full_unstemmed Direct Observation of Protein Microcrystals in Crystallization Buffer by Atmospheric Scanning Electron Microscopy
title_short Direct Observation of Protein Microcrystals in Crystallization Buffer by Atmospheric Scanning Electron Microscopy
title_sort direct observation of protein microcrystals in crystallization buffer by atmospheric scanning electron microscopy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431877/
https://www.ncbi.nlm.nih.gov/pubmed/22949879
http://dx.doi.org/10.3390/ijms130810553
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