Cargando…

Expressed sequence tags (ESTs) from young leaves of Metroxylon sagu

Sago palm, or Metroxylon sagu, is a hardy and versatile plant that is able to tolerate many stresses, biotic and abiotic, during its growth. It is one of the plants that are able to grow in waterlogged area where others could not. Apart from that sago palm is also a source of starch, contributes eco...

Descripción completa

Detalles Bibliográficos
Autores principales: Wee, Ching Ching, Roslan, Hairul Azman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3433882/
http://dx.doi.org/10.1007/s13205-012-0048-6
_version_ 1782242360541839360
author Wee, Ching Ching
Roslan, Hairul Azman
author_facet Wee, Ching Ching
Roslan, Hairul Azman
author_sort Wee, Ching Ching
collection PubMed
description Sago palm, or Metroxylon sagu, is a hardy and versatile plant that is able to tolerate many stresses, biotic and abiotic, during its growth. It is one of the plants that are able to grow in waterlogged area where others could not. Apart from that sago palm is also a source of starch, contributes economically to the people and an important export for the state of Sarawak. Despite the importance of sago palm especially in the production of starch and its ability to withstand stresses, so far, not many molecular studies have been reported on sago palm. To study the characters in sago palm, transcriptome analysis was conducted where it would give a better understanding of the plant development through gene expression. Here, we report the construction of a cDNA library and preliminary expressed sequence tags analysis from the young leaves of sago palm. A total of 434 clones were sequenced with inserts ranging from 1,000 to 3,000 bps with primary and amplified titers of 8 × 10(5) and 1.0 × 10(9) pfu/ml, respectively. Clustering of these sequences resulted in a set of 372 tentative unigenes comprising 340 singletons and 32 contigs. The database was also annotated with BLAST2GO which showed that majority of the transcripts were involved in primary metabolism and stress tolerance.
format Online
Article
Text
id pubmed-3433882
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher Springer Berlin Heidelberg
record_format MEDLINE/PubMed
spelling pubmed-34338822012-09-07 Expressed sequence tags (ESTs) from young leaves of Metroxylon sagu Wee, Ching Ching Roslan, Hairul Azman 3 Biotech Original Article Sago palm, or Metroxylon sagu, is a hardy and versatile plant that is able to tolerate many stresses, biotic and abiotic, during its growth. It is one of the plants that are able to grow in waterlogged area where others could not. Apart from that sago palm is also a source of starch, contributes economically to the people and an important export for the state of Sarawak. Despite the importance of sago palm especially in the production of starch and its ability to withstand stresses, so far, not many molecular studies have been reported on sago palm. To study the characters in sago palm, transcriptome analysis was conducted where it would give a better understanding of the plant development through gene expression. Here, we report the construction of a cDNA library and preliminary expressed sequence tags analysis from the young leaves of sago palm. A total of 434 clones were sequenced with inserts ranging from 1,000 to 3,000 bps with primary and amplified titers of 8 × 10(5) and 1.0 × 10(9) pfu/ml, respectively. Clustering of these sequences resulted in a set of 372 tentative unigenes comprising 340 singletons and 32 contigs. The database was also annotated with BLAST2GO which showed that majority of the transcripts were involved in primary metabolism and stress tolerance. Springer Berlin Heidelberg 2012-03-06 2012-09 /pmc/articles/PMC3433882/ http://dx.doi.org/10.1007/s13205-012-0048-6 Text en © The Author(s) 2012 https://creativecommons.org/licenses/by/4.0/ This article is published under license to BioMed Central Ltd. Open Access This article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution and reproduction in any medium, provided the original author(s) and source are credited.
spellingShingle Original Article
Wee, Ching Ching
Roslan, Hairul Azman
Expressed sequence tags (ESTs) from young leaves of Metroxylon sagu
title Expressed sequence tags (ESTs) from young leaves of Metroxylon sagu
title_full Expressed sequence tags (ESTs) from young leaves of Metroxylon sagu
title_fullStr Expressed sequence tags (ESTs) from young leaves of Metroxylon sagu
title_full_unstemmed Expressed sequence tags (ESTs) from young leaves of Metroxylon sagu
title_short Expressed sequence tags (ESTs) from young leaves of Metroxylon sagu
title_sort expressed sequence tags (ests) from young leaves of metroxylon sagu
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3433882/
http://dx.doi.org/10.1007/s13205-012-0048-6
work_keys_str_mv AT weechingching expressedsequencetagsestsfromyoungleavesofmetroxylonsagu
AT roslanhairulazman expressedsequencetagsestsfromyoungleavesofmetroxylonsagu