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Indel-tolerant read mapping with trinucleotide frequencies using cache-oblivious kd-trees
Motivation: Mapping billions of reads from next generation sequencing experiments to reference genomes is a crucial task, which can require hundreds of hours of running time on a single CPU even for the fastest known implementations. Traditional approaches have difficulties dealing with matches of l...
| Autores principales: | , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Oxford University Press
2012
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3436807/ https://www.ncbi.nlm.nih.gov/pubmed/22962448 http://dx.doi.org/10.1093/bioinformatics/bts380 |