Cargando…

FSTVAL: a new web tool to validate bulk flanking sequence tags

BACKGROUND: Information about a transgene locus is one of the major concerns in transgenic research because expression of the transgene or a gene interrupted by the integration event could be affected. Thus, the flanking sequences obtained from transgenic plants need to be analyzed in terms of genom...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kim, Joung Sug, Kim, Jiye, Lee, Tae-Ho, Jun, Kyong Mi, Kim, Tea Hoon, Kim, Yul-Ho, Park, Hyang-Mi, Jeon, Jong-Seong, An, Gynheung, Yoon, Ung-Han, Nahm, Baek Hie, Kim, Yeon-Ki
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3439307/ https://www.ncbi.nlm.nih.gov/pubmed/22709793 http://dx.doi.org/10.1186/1746-4811-8-19

Ejemplares similares

GBParsy: A GenBank flatfile parser library with high speed
por: Lee, Tae-Ho, et al.
Publicado: (2008)

Analysis of Genes with Alternatively Spliced Transcripts in the Leaf, Root, Panicle and Seed of Rice Using a Long Oligomer Microarray and RNA-Seq
por: Chae, Songhwa, et al.
Publicado: (2017)

A Pepper MSRB2 Gene Confers Drought Tolerance in Rice through the Protection of Chloroplast-Targeted Genes
por: Kim, Joung Sug, et al.
Publicado: (2014)

RapaNet: A Web Tool for the Co-Expression Analysis of Brassica rapa Genes
por: Kim, Jiye, et al.
Publicado: (2017)

Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice
por: Kim, Joung Sug, et al.
Publicado: (2017)

Quadruple 9-mer-based protein binding microarray with DsRed fusion protein
por: Kim, Min-Jeong, et al.
Publicado: (2009)

TagSmart: analysis and visualization for yeast mutant fitness data measured by tag microarrays
por: Kim, Chulyun, et al.
Publicado: (2007)

A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice
por: Minh-Thu, Pham-Thi, et al.
Publicado: (2018)

Functional classification of rice flanking sequence tagged genes using MapMan terms and global understanding on metabolic and regulatory pathways affected by dxr mutant having defects in light response
por: Chandran, Anil Kumar Nalini, et al.
Publicado: (2016)

An integrated strategy for target SSR genotyping with toleration of nucleotide variations in the SSRs and flanking regions
por: Huo, Yongxue, et al.
Publicado: (2021)

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets
por: Schmieder, Robert, et al.
Publicado: (2010)

Effect of vibration during bulk and incremental filling on adaptation of a bulk-fill composite resin
por: Kim, Yung-Soo, et al.
Publicado: (2022)

Rice protein-binding microarrays: a tool to detect cis-acting elements near promoter regions in rice
por: Kim, Joung Sug, et al.
Publicado: (2021)

ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery
por: You, Frank M, et al.
Publicado: (2009)

Epidemiologic Changes of Facial Bone Fracture before and after Coronavirus Disease 2019: A Level 1 Trauma Center in Korea
por: Kim, Jeong Ho, et al.
Publicado: (2023)

GPrimer: a fast GPU-based pipeline for primer design for qPCR experiments
por: Bae, Jeongmin, et al.
Publicado: (2021)

Accelerating a cross-correlation score function to search modifications using a single GPU
por: Kim, Hyunwoo, et al.
Publicado: (2018)

Web-based design and analysis tools for CRISPR base editing
por: Hwang, Gue-Ho, et al.
Publicado: (2018)

MT-Toolbox: improved amplicon sequencing using molecule tags
por: Yourstone, Scott M, et al.
Publicado: (2014)

Erratum: Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest
por: Ji, Hyeonso, et al.
Publicado: (2016)

Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest
por: Ji, Hyeonso, et al.
Publicado: (2016)

CDSeqR: fast complete deconvolution for gene expression data from bulk tissues
por: Kang, Kai, et al.
Publicado: (2021)

ESTPiper – a web-based analysis pipeline for expressed sequence tags
por: Tang, Zuojian, et al.
Publicado: (2009)

MedTAG: a portable and customizable annotation tool for biomedical documents
por: Giachelle, Fabio, et al.
Publicado: (2021)

Characterization of the Nanog 5′-flanking Region in Bovine
por: Choi, Don-Ho, et al.
Publicado: (2016)

CYPminer: an automated cytochrome P450 identification, classification, and data analysis tool for genome data sets across kingdoms
por: Kweon, Ohgew, et al.
Publicado: (2020)

SCSIM: Jointly simulating correlated single-cell and bulk next-generation DNA sequencing data
por: Giguere, Collin, et al.
Publicado: (2020)

Searchlight: automated bulk RNA-seq exploration and visualisation using dynamically generated R scripts
por: Cole, John J., et al.
Publicado: (2021)

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
por: Lee, Tae-Ho, et al.
Publicado: (2014)

Generation of non-genomic oligonucleotide tag sequences for RNA template-specific PCR
por: Pinto, Fernando Lopes, et al.
Publicado: (2006)

prot4EST: Translating Expressed Sequence Tags from neglected genomes
por: Wasmuth, James D, et al.
Publicado: (2004)

TCC: an R package for comparing tag count data with robust normalization strategies
por: Sun, Jianqiang, et al.
Publicado: (2013)

Mining locus tags in PubMed Central to improve microbial gene annotation
por: Stubben, Chris J, et al.
Publicado: (2014)

trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags
por: Renaud, Gabriel, et al.
Publicado: (2014)

PyBSASeq: a simple and effective algorithm for bulked segregant analysis with whole-genome sequencing data
por: Zhang, Jianbo, et al.
Publicado: (2020)

The MOBSTER R package for tumour subclonal deconvolution from bulk DNA whole-genome sequencing data
por: Caravagna, Giulio, et al.
Publicado: (2020)

Snagger: A user-friendly program for incorporating additional information for tagSNP selection
por: Edlund, Christopher K, et al.
Publicado: (2008)

Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries
por: Keime, Céline, et al.
Publicado: (2004)

LD(2)SNPing: linkage disequilibrium plotter and RFLP enzyme mining for tag SNPs
por: Chang, Hsueh-Wei, et al.
Publicado: (2009)

TagDust2: a generic method to extract reads from sequencing data
por: Lassmann, Timo
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_rln3hrm32lc5s3nm4rftuhnmt0