Cargando…

Sequence dependence of transcription factor-mediated DNA looping

DNA is subject to large deformations in a wide range of biological processes. Two key examples illustrate how such deformations influence the readout of the genetic information: the sequestering of eukaryotic genes by nucleosomes and DNA looping in transcriptional regulation in both prokaryotes and...

Descripción completa

Detalles Bibliográficos
Autores principales:	Johnson, Stephanie, Lindén, Martin, Phillips, Rob
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2012
Materias:	Gene Regulation, Chromatin and Epigenetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3439888/ https://www.ncbi.nlm.nih.gov/pubmed/22718983 http://dx.doi.org/10.1093/nar/gks473

Ejemplares similares

Hypoxia-induced transcriptional stress is mediated by ROS-induced R-loops
por: Ma, Tiffany S, et al.
Publicado: (2023)

Protein-mediated looping of DNA under tension requires supercoiling
por: Yan, Yan, et al.
Publicado: (2018)

DNA-mediated cooperativity facilitates the co-selection of cryptic enhancer sequences by SOX2 and PAX6 transcription factors
por: Narasimhan, Kamesh, et al.
Publicado: (2015)

FRET studies of a landscape of Lac repressor-mediated DNA loops
por: Haeusler, Aaron R., et al.
Publicado: (2012)

Protein-mediated loops in supercoiled DNA create large topological domains
por: Yan, Yan, et al.
Publicado: (2018)

Mechanism of retinoic acid-induced transcription: histone code, DNA oxidation and formation of chromatin loops
por: Zuchegna, Candida, et al.
Publicado: (2014)

Efficient chromosomal-scale DNA looping in Escherichia coli using multiple DNA-looping elements
por: Hao, Nan, et al.
Publicado: (2017)

A universal transcription pause sequence is an element of initiation factor σ70-dependent pausing
por: Bird, Jeremy G., et al.
Publicado: (2016)

CTCF-mediated chromatin looping provides a topological framework for the formation of phase-separated transcriptional condensates
por: Lee, Ryanggeun, et al.
Publicado: (2021)

Discovery, optimization and validation of an optimal DNA-binding sequence for the Six1 homeodomain transcription factor
por: Liu, Yubing, et al.
Publicado: (2012)

Lineage specific transcription factors and epigenetic regulators mediate TGFβ-dependent enhancer activation
por: Fueyo, Raquel, et al.
Publicado: (2018)

Octamer-dependent transcription in T cells is mediated by NFAT and NF-κB
por: Mueller, Kerstin, et al.
Publicado: (2013)

Single molecule characterization of the binding kinetics of a transcription factor and its modulation by DNA sequence and methylation
por: Khamis, Hadeel, et al.
Publicado: (2021)

Native elongation transcript sequencing reveals temperature dependent dynamics of nascent RNAPII transcription in Arabidopsis
por: Kindgren, Peter, et al.
Publicado: (2020)

Cooperative DNA looping by PRC2 complexes
por: Lin, Xingcheng, et al.
Publicado: (2021)

Negative DNA supercoiling makes protein-mediated looping deterministic and ergodic within the bacterial doubling time
por: Yan, Yan, et al.
Publicado: (2021)

Sequence-dependent DNA condensation as a driving force of DNA phase separation
por: Kang, Hyunju, et al.
Publicado: (2018)

Sequence-specific dynamics of DNA response elements and their flanking sites regulate the recognition by AP-1 transcription factors
por: Hörberg, Johanna, et al.
Publicado: (2021)

DNA sequence encoded repression of rRNA gene transcription in chromatin
por: Felle, Max, et al.
Publicado: (2010)

Mechanism of promoter repression by Lac repressor–DNA loops
por: Becker, Nicole A., et al.
Publicado: (2013)

Designed architectural proteins that tune DNA looping in bacteria
por: Tse, David H, et al.
Publicado: (2021)

Notch-dependent and -independent functions of transcription factor RBPJ
por: Friedrich, Tobias, et al.
Publicado: (2022)

PCAF interacts with XBP-1S and mediates XBP-1S-dependent transcription
por: Lew, Qiao Jing, et al.
Publicado: (2011)

Transcriptional activation by mitochondrial transcription factor A involves preferential distortion of promoter DNA
por: Malarkey, Christopher S., et al.
Publicado: (2012)

Methyl-dependent and spatial-specific DNA recognition by the orthologous transcription factors human AP-1 and Epstein-Barr virus Zta
por: Hong, Samuel, et al.
Publicado: (2017)

Enhancer-mediated enrichment of interacting JMJD3–DDX21 to ENPP2 locus prevents R-loop formation and promotes transcription
por: Argaud, Deborah, et al.
Publicado: (2019)

LDB1-mediated enhancer looping can be established independent of mediator and cohesin
por: Krivega, Ivan, et al.
Publicado: (2017)

Identification of DNA regions and a set of transcriptional regulatory factors involved in transcriptional regulation of several human liver-enriched transcription factor genes
por: Miura, Hisashi, et al.
Publicado: (2009)

DNA residence time is a regulatory factor of transcription repression
por: Clauß, Karen, et al.
Publicado: (2017)

The Igf2/H19 imprinting control region exhibits sequence-specific and cell-type-dependent DNA methylation-mediated repression
por: Chen, Yinming, et al.
Publicado: (2009)

Mediator binds to boundaries of chromosomal interaction domains and to proteins involved in DNA looping, RNA metabolism, chromatin remodeling, and actin assembly
por: Chereji, Răzvan V., et al.
Publicado: (2017)

Antisense transcripts enhanced by camptothecin at divergent CpG-island promoters associated with bursts of topoisomerase I-DNA cleavage complex and R-loop formation
por: Marinello, Jessica, et al.
Publicado: (2013)

RNA helicase-dependent gene looping impacts messenger RNA processing
por: Terrone, Sophie, et al.
Publicado: (2022)

Genome-wide relationship between R-loop formation and antisense transcription in Escherichia coli
por: Raghunathan, Nalini, et al.
Publicado: (2018)

Quantification of transcription factor-DNA binding affinity in a living cell
por: Belikov, Sergey, et al.
Publicado: (2016)

Structural basis of specific DNA binding by the transcription factor ZBTB24
por: Ren, Ren, et al.
Publicado: (2019)

Yeast transcription factor Msn2 binds to G4 DNA
por: Duy, Duong Long, et al.
Publicado: (2023)

Differential sensitivity to methylated DNA by ETS-family transcription factors is intrinsically encoded in their DNA-binding domains
por: Stephens, Dominique C., et al.
Publicado: (2016)

High-throughput data and modeling reveal insights into the mechanisms of cooperative DNA-binding by transcription factor proteins
por: Martin, Vincentius, et al.
Publicado: (2023)

DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation
por: Alexandrov, Boian S., et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_q4t5e1d19ll3rqhbtvf854t4d0