Current challenges in de novo plant genome sequencing and assembly

Genome sequencing is now affordable, but assembling plant genomes de novo remains challenging. We assess the state of the art of assembly and review the best practices for the community.

Detalles Bibliográficos
Autores principales: Schatz, Michael C, Witkowski, Jan, McCombie, W Richard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2012
Materias:
Review
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3446297/
https://www.ncbi.nlm.nih.gov/pubmed/22546054
http://dx.doi.org/10.1186/gb-2012-13-4-243
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author Schatz, Michael C
Witkowski, Jan
McCombie, W Richard
author_facet Schatz, Michael C
Witkowski, Jan
McCombie, W Richard
author_sort Schatz, Michael C
collection PubMed
description Genome sequencing is now affordable, but assembling plant genomes de novo remains challenging. We assess the state of the art of assembly and review the best practices for the community.
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spelling pubmed-34462972013-04-27 Current challenges in de novo plant genome sequencing and assembly Schatz, Michael C Witkowski, Jan McCombie, W Richard Genome Biol Review Genome sequencing is now affordable, but assembling plant genomes de novo remains challenging. We assess the state of the art of assembly and review the best practices for the community. BioMed Central 2012 2012-04-27 /pmc/articles/PMC3446297/ /pubmed/22546054 http://dx.doi.org/10.1186/gb-2012-13-4-243 Text en Copyright ©2012 BioMed Central Ltd.
spellingShingle Review
Schatz, Michael C
Witkowski, Jan
McCombie, W Richard
Current challenges in de novo plant genome sequencing and assembly
title Current challenges in de novo plant genome sequencing and assembly
title_full Current challenges in de novo plant genome sequencing and assembly
title_fullStr Current challenges in de novo plant genome sequencing and assembly
title_full_unstemmed Current challenges in de novo plant genome sequencing and assembly
title_short Current challenges in de novo plant genome sequencing and assembly
title_sort current challenges in de novo plant genome sequencing and assembly
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3446297/
https://www.ncbi.nlm.nih.gov/pubmed/22546054
http://dx.doi.org/10.1186/gb-2012-13-4-243
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