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Compressive sensing based reconstruction in bioluminescence tomography improves image resolution and robustness to noise
Bioluminescence Tomography attempts to quantify 3-dimensional luminophore distributions from surface measurements of the light distribution. The reconstruction problem is typically severely under-determined due to the number and location of measurements, but in certain cases the molecules or cells o...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Optical Society of America
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3447555/ https://www.ncbi.nlm.nih.gov/pubmed/23024907 http://dx.doi.org/10.1364/BOE.3.002131 |
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author | Basevi, Hector R. A. Tichauer, Kenneth M. Leblond, Frederic Dehghani, Hamid Guggenheim, James A. Holt, Robert W. Styles, Iain B. |
author_facet | Basevi, Hector R. A. Tichauer, Kenneth M. Leblond, Frederic Dehghani, Hamid Guggenheim, James A. Holt, Robert W. Styles, Iain B. |
author_sort | Basevi, Hector R. A. |
collection | PubMed |
description | Bioluminescence Tomography attempts to quantify 3-dimensional luminophore distributions from surface measurements of the light distribution. The reconstruction problem is typically severely under-determined due to the number and location of measurements, but in certain cases the molecules or cells of interest form localised clusters, resulting in a distribution of luminophores that is spatially sparse. A Conjugate Gradient-based reconstruction algorithm using Compressive Sensing was designed to take advantage of this sparsity, using a multistage sparsity reduction approach to remove the need to choose sparsity weighting a priori. Numerical simulations were used to examine the effect of noise on reconstruction accuracy. Tomographic bioluminescence measurements of a Caliper XPM-2 Phantom Mouse were acquired and reconstructions from simulation and this experimental data show that Compressive Sensing-based reconstruction is superior to standard reconstruction techniques, particularly in the presence of noise. |
format | Online Article Text |
id | pubmed-3447555 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Optical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-34475552012-09-28 Compressive sensing based reconstruction in bioluminescence tomography improves image resolution and robustness to noise Basevi, Hector R. A. Tichauer, Kenneth M. Leblond, Frederic Dehghani, Hamid Guggenheim, James A. Holt, Robert W. Styles, Iain B. Biomed Opt Express Image Reconstruction and Inverse Problems Bioluminescence Tomography attempts to quantify 3-dimensional luminophore distributions from surface measurements of the light distribution. The reconstruction problem is typically severely under-determined due to the number and location of measurements, but in certain cases the molecules or cells of interest form localised clusters, resulting in a distribution of luminophores that is spatially sparse. A Conjugate Gradient-based reconstruction algorithm using Compressive Sensing was designed to take advantage of this sparsity, using a multistage sparsity reduction approach to remove the need to choose sparsity weighting a priori. Numerical simulations were used to examine the effect of noise on reconstruction accuracy. Tomographic bioluminescence measurements of a Caliper XPM-2 Phantom Mouse were acquired and reconstructions from simulation and this experimental data show that Compressive Sensing-based reconstruction is superior to standard reconstruction techniques, particularly in the presence of noise. Optical Society of America 2012-08-15 /pmc/articles/PMC3447555/ /pubmed/23024907 http://dx.doi.org/10.1364/BOE.3.002131 Text en © 2012 Optical Society of America http://creativecommons.org/licenses/by-nc-nd/3.0 This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License, which permits download and redistribution, provided that the original work is properly cited. This license restricts the article from being modified or used commercially. |
spellingShingle | Image Reconstruction and Inverse Problems Basevi, Hector R. A. Tichauer, Kenneth M. Leblond, Frederic Dehghani, Hamid Guggenheim, James A. Holt, Robert W. Styles, Iain B. Compressive sensing based reconstruction in bioluminescence tomography improves image resolution and robustness to noise |
title | Compressive sensing based reconstruction in bioluminescence tomography improves image resolution and robustness to noise |
title_full | Compressive sensing based reconstruction in bioluminescence tomography improves image resolution and robustness to noise |
title_fullStr | Compressive sensing based reconstruction in bioluminescence tomography improves image resolution and robustness to noise |
title_full_unstemmed | Compressive sensing based reconstruction in bioluminescence tomography improves image resolution and robustness to noise |
title_short | Compressive sensing based reconstruction in bioluminescence tomography improves image resolution and robustness to noise |
title_sort | compressive sensing based reconstruction in bioluminescence tomography improves image resolution and robustness to noise |
topic | Image Reconstruction and Inverse Problems |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3447555/ https://www.ncbi.nlm.nih.gov/pubmed/23024907 http://dx.doi.org/10.1364/BOE.3.002131 |
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