OrFin: A web tool for detection of putative orthologs

Identification of ortholog is one of the important tasks to understand a novel genome. It helps to assign functional annotations, from one organism to another organism. To identify the putative ortholog, Reciprocal Best BLAST hit (RBBH) method is known to be an efficient approach. OrFin makes use of...

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Autores principales: Midha, Mohit, Polavarapu, Raja, Meetei, Potshangbam Angamba, Krishnan, Hari, Mohareer, Krishnaveni, Vindal, Vaibhav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2012
Materias:
Server
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3449379/
https://www.ncbi.nlm.nih.gov/pubmed/23055622
http://dx.doi.org/10.6026/97320630008738
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author Midha, Mohit
Polavarapu, Raja
Meetei, Potshangbam Angamba
Krishnan, Hari
Mohareer, Krishnaveni
Vindal, Vaibhav
author_facet Midha, Mohit
Polavarapu, Raja
Meetei, Potshangbam Angamba
Krishnan, Hari
Mohareer, Krishnaveni
Vindal, Vaibhav
author_sort Midha, Mohit
collection PubMed
description Identification of ortholog is one of the important tasks to understand a novel genome. It helps to assign functional annotations, from one organism to another organism. To identify the putative ortholog, Reciprocal Best BLAST hit (RBBH) method is known to be an efficient approach. OrFin makes use of the same approach to identify pair of orthologous proteins for a given set of sequences of two species. It is a user-friendly web tool which works with user defined parameters to search RBBHs. Results are produced in both html and text format. AVAILABILITY: This web tool is freely available at http://bifl.uohyd.ac.in/orfin
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spelling pubmed-34493792012-10-09 OrFin: A web tool for detection of putative orthologs Midha, Mohit Polavarapu, Raja Meetei, Potshangbam Angamba Krishnan, Hari Mohareer, Krishnaveni Vindal, Vaibhav Bioinformation Server Identification of ortholog is one of the important tasks to understand a novel genome. It helps to assign functional annotations, from one organism to another organism. To identify the putative ortholog, Reciprocal Best BLAST hit (RBBH) method is known to be an efficient approach. OrFin makes use of the same approach to identify pair of orthologous proteins for a given set of sequences of two species. It is a user-friendly web tool which works with user defined parameters to search RBBHs. Results are produced in both html and text format. AVAILABILITY: This web tool is freely available at http://bifl.uohyd.ac.in/orfin Biomedical Informatics 2012-08-03 /pmc/articles/PMC3449379/ /pubmed/23055622 http://dx.doi.org/10.6026/97320630008738 Text en © 2012 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Server
Midha, Mohit
Polavarapu, Raja
Meetei, Potshangbam Angamba
Krishnan, Hari
Mohareer, Krishnaveni
Vindal, Vaibhav
OrFin: A web tool for detection of putative orthologs
title OrFin: A web tool for detection of putative orthologs
title_full OrFin: A web tool for detection of putative orthologs
title_fullStr OrFin: A web tool for detection of putative orthologs
title_full_unstemmed OrFin: A web tool for detection of putative orthologs
title_short OrFin: A web tool for detection of putative orthologs
title_sort orfin: a web tool for detection of putative orthologs
topic Server
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3449379/
https://www.ncbi.nlm.nih.gov/pubmed/23055622
http://dx.doi.org/10.6026/97320630008738
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