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Estimating Litter Decomposition Rate in Single-Pool Models Using Nonlinear Beta Regression
Litter decomposition rate (k) is typically estimated from proportional litter mass loss data using models that assume constant, normally distributed errors. However, such data often show non-normal errors with reduced variance near bounds (0 or 1), potentially leading to biased k estimates. We compa...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3458010/ https://www.ncbi.nlm.nih.gov/pubmed/23049771 http://dx.doi.org/10.1371/journal.pone.0045140 |
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author | Laliberté, Etienne Adair, E. Carol Hobbie, Sarah E. |
author_facet | Laliberté, Etienne Adair, E. Carol Hobbie, Sarah E. |
author_sort | Laliberté, Etienne |
collection | PubMed |
description | Litter decomposition rate (k) is typically estimated from proportional litter mass loss data using models that assume constant, normally distributed errors. However, such data often show non-normal errors with reduced variance near bounds (0 or 1), potentially leading to biased k estimates. We compared the performance of nonlinear regression using the beta distribution, which is well-suited to bounded data and this type of heteroscedasticity, to standard nonlinear regression (normal errors) on simulated and real litter decomposition data. Although the beta model often provided better fits to the simulated data (based on the corrected Akaike Information Criterion, AIC(c)), standard nonlinear regression was robust to violation of homoscedasticity and gave equally or more accurate k estimates as nonlinear beta regression. Our simulation results also suggest that k estimates will be most accurate when study length captures mid to late stage decomposition (50–80% mass loss) and the number of measurements through time is ≥5. Regression method and data transformation choices had the smallest impact on k estimates during mid and late stage decomposition. Estimates of k were more variable among methods and generally less accurate during early and end stage decomposition. With real data, neither model was predominately best; in most cases the models were indistinguishable based on AIC(c), and gave similar k estimates. However, when decomposition rates were high, normal and beta model k estimates often diverged substantially. Therefore, we recommend a pragmatic approach where both models are compared and the best is selected for a given data set. Alternatively, both models may be used via model averaging to develop weighted parameter estimates. We provide code to perform nonlinear beta regression with freely available software. |
format | Online Article Text |
id | pubmed-3458010 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-34580102012-10-03 Estimating Litter Decomposition Rate in Single-Pool Models Using Nonlinear Beta Regression Laliberté, Etienne Adair, E. Carol Hobbie, Sarah E. PLoS One Research Article Litter decomposition rate (k) is typically estimated from proportional litter mass loss data using models that assume constant, normally distributed errors. However, such data often show non-normal errors with reduced variance near bounds (0 or 1), potentially leading to biased k estimates. We compared the performance of nonlinear regression using the beta distribution, which is well-suited to bounded data and this type of heteroscedasticity, to standard nonlinear regression (normal errors) on simulated and real litter decomposition data. Although the beta model often provided better fits to the simulated data (based on the corrected Akaike Information Criterion, AIC(c)), standard nonlinear regression was robust to violation of homoscedasticity and gave equally or more accurate k estimates as nonlinear beta regression. Our simulation results also suggest that k estimates will be most accurate when study length captures mid to late stage decomposition (50–80% mass loss) and the number of measurements through time is ≥5. Regression method and data transformation choices had the smallest impact on k estimates during mid and late stage decomposition. Estimates of k were more variable among methods and generally less accurate during early and end stage decomposition. With real data, neither model was predominately best; in most cases the models were indistinguishable based on AIC(c), and gave similar k estimates. However, when decomposition rates were high, normal and beta model k estimates often diverged substantially. Therefore, we recommend a pragmatic approach where both models are compared and the best is selected for a given data set. Alternatively, both models may be used via model averaging to develop weighted parameter estimates. We provide code to perform nonlinear beta regression with freely available software. Public Library of Science 2012-09-25 /pmc/articles/PMC3458010/ /pubmed/23049771 http://dx.doi.org/10.1371/journal.pone.0045140 Text en © 2012 Laliberté et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Laliberté, Etienne Adair, E. Carol Hobbie, Sarah E. Estimating Litter Decomposition Rate in Single-Pool Models Using Nonlinear Beta Regression |
title | Estimating Litter Decomposition Rate in Single-Pool Models Using Nonlinear Beta Regression |
title_full | Estimating Litter Decomposition Rate in Single-Pool Models Using Nonlinear Beta Regression |
title_fullStr | Estimating Litter Decomposition Rate in Single-Pool Models Using Nonlinear Beta Regression |
title_full_unstemmed | Estimating Litter Decomposition Rate in Single-Pool Models Using Nonlinear Beta Regression |
title_short | Estimating Litter Decomposition Rate in Single-Pool Models Using Nonlinear Beta Regression |
title_sort | estimating litter decomposition rate in single-pool models using nonlinear beta regression |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3458010/ https://www.ncbi.nlm.nih.gov/pubmed/23049771 http://dx.doi.org/10.1371/journal.pone.0045140 |
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