Cargando…

High throughput whole rumen metagenome profiling using untargeted massively parallel sequencing

BACKGROUND: Variation of microorganism communities in the rumen of cattle (Bos taurus) is of great interest because of possible links to economically or environmentally important traits, such as feed conversion efficiency or methane emission levels. The resolution of studies investigating this varia...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ross, Elizabeth M, Moate, Peter J, Bath, Carolyn R, Davidson, Sophie E, Sawbridge, Tim I, Guthridge, Kathryn M, Cocks, Ben G, Hayes, Ben J
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3464612/ https://www.ncbi.nlm.nih.gov/pubmed/22747657 http://dx.doi.org/10.1186/1471-2156-13-53

Ejemplares similares

Metagenomics of rumen bacteriophage from thirteen lactating dairy cattle
por: Ross, Elizabeth M, et al.
Publicado: (2013)

Metagenomic Predictions: From Microbiome to Complex Health and Environmental Phenotypes in Humans and Cattle
por: Ross, Elizabeth M., et al.
Publicado: (2013)

Dietary wheat and reduced methane yield are linked to rumen microbiome changes in dairy cows
por: Savin, Keith W., et al.
Publicado: (2022)

UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis
por: Kontou, Eftychia E., et al.
Publicado: (2023)

Low-cost sample preservation methods for high-throughput processing of rumen microbiomes
por: Budel, Juliana C. C., et al.
Publicado: (2022)

Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome
por: Amaral, Andreia J, et al.
Publicado: (2009)

A new massively parallel nanoball sequencing platform for whole exome research
por: Xu, Yu, et al.
Publicado: (2019)

Statistical method to compare massive parallel sequencing pipelines
por: Elsensohn, MH., et al.
Publicado: (2017)

Filtering procedures for untargeted LC-MS metabolomics data
por: Schiffman, Courtney, et al.
Publicado: (2019)

Massively parallel nanowell-based single-cell gene expression profiling
por: Goldstein, Leonard D., et al.
Publicado: (2017)

A general method to eliminate laboratory induced recombinants during massive, parallel sequencing of cDNA library
por: Waugh, Caryll, et al.
Publicado: (2015)

Automated nutrient screening system enables high-throughput optimisation of microalgae production conditions
por: Radzun, Khairul Adzfa, et al.
Publicado: (2015)

Increased Throughput by Parallelization of Library Preparation for Massive Sequencing
por: Lundin, Sverker, et al.
Publicado: (2010)

High throughput automatic muscle image segmentation using parallel framework
por: Cui, Lei, et al.
Publicado: (2019)

Linear models enable powerful differential activity analysis in massively parallel reporter assays
por: Myint, Leslie, et al.
Publicado: (2019)

High throughput whole mitochondrial genome sequencing by two platforms of massively parallel sequencing
por: Seo, Seung Bum, et al.
Publicado: (2014)

Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools
por: Alexeyenko, Andrey, et al.
Publicado: (2014)

High throughput phenotyping for aphid resistance in large plant collections
por: Chen, Xi, et al.
Publicado: (2012)

A Massively Parallel Sequence Similarity Search for Metagenomic Sequencing Data
por: Kakuta, Masanori, et al.
Publicado: (2017)

Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing
por: Lind, Abigail L., et al.
Publicado: (2021)

Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology
por: Ruan, Jue, et al.
Publicado: (2013)

Massively-parallel sequencing of genes on a single chromosome: a comparison of solution hybrid selection and flow sorting
por: Teer, Jamie K, et al.
Publicado: (2013)

Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
por: Pinard, Robert, et al.
Publicado: (2006)

High-throughput analysis of the transcriptional patterns of sexual genes in malaria
por: Cruz Camacho, Abel, et al.
Publicado: (2023)

Transcriptional Dissection of Human Limbal Niche Compartments by Massive Parallel Sequencing
por: Bath, Chris, et al.
Publicado: (2013)

Picodroplet partitioned whole genome amplification of low biomass samples preserves genomic diversity for metagenomic analysis
por: Hammond, Maria, et al.
Publicado: (2016)

In-depth resistome analysis by targeted metagenomics
por: Lanza, Val F., et al.
Publicado: (2018)

Comprehensive Assessment of Potential Multiple Myeloma Immunoglobulin Heavy Chain V-D-J Intraclonal Variation Using Massively Parallel Pyrosequencing
por: Tschumper, Renee C., et al.
Publicado: (2012)

FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets
por: Pope, Bernard J, et al.
Publicado: (2013)

A whole-plant chamber system for parallel gas exchange measurements of Arabidopsis and other herbaceous species
por: Kölling, Katharina, et al.
Publicado: (2015)

Accurate inference of shoot biomass from high-throughput images of cereal plants
por: Golzarian, Mahmood R, et al.
Publicado: (2011)

Correction: Transcriptional Dissection of Human Limbal Niche Compartments by Massive Parallel Sequencing
por: Bath, Chris, et al.
Publicado: (2013)

Feature selection for gene prediction in metagenomic fragments
por: Al-Ajlan, Amani, et al.
Publicado: (2018)

Metagenomic Predictions: A Review 10 years on
por: Ross, Elizabeth M, et al.
Publicado: (2022)

The rumen microbial metagenome associated with high methane production in cattle
por: Wallace, R. John, et al.
Publicado: (2015)

Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)
por: Stoffel, Kevin, et al.
Publicado: (2012)

A rapid high-throughput sequencing-based approach for the identification of unknown bacterial pathogens in whole blood
por: Israeli, Ofir, et al.
Publicado: (2020)

Metagenomic Insights into the Fibrolytic Microbiome in Yak Rumen
por: Dai, Xin, et al.
Publicado: (2012)

The use of ecological analytical tools as an unconventional approach for untargeted metabolomics data analysis: the case of Cecropia obtusifolia and its adaptive responses to nitrate starvation
por: Cadena-Zamudio, Jorge David, et al.
Publicado: (2022)

Massively Parallel Haplotyping on Microscopic Beads for the High-Throughput Phase Analysis of Single Molecules
por: Boulanger, Jérôme, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_ckghgsf23vtqt27st6o0c5e4vp