Cargando…

Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes

A set of 2486 single nucleotide polymorphisms (SNPs) were compiled in chickpea using four approaches, namely (i) Solexa/Illumina sequencing (1409), (ii) amplicon sequencing of tentative orthologous genes (TOGs) (604), (iii) mining of expressed sequence tags (ESTs) (286) and (iv) sequencing of candid...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hiremath, Pavana J, Kumar, Ashish, Penmetsa, Ramachandra Varma, Farmer, Andrew, Schlueter, Jessica A, Chamarthi, Siva K, Whaley, Adam M, Carrasquilla-Garcia, Noelia, Gaur, Pooran M, Upadhyaya, Hari D, Kavi Kishor, Polavarapu B, Shah, Trushar M, Cook, Douglas R, Varshney, Rajeev K
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Blackwell Publishing Ltd 2012
Materias:	Research Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3465799/ https://www.ncbi.nlm.nih.gov/pubmed/22703242 http://dx.doi.org/10.1111/j.1467-7652.2012.00710.x

Ejemplares similares

Large-Scale Development of Cost-Effective Single-Nucleotide Polymorphism Marker Assays for Genetic Mapping in Pigeonpea and Comparative Mapping in Legumes
por: Saxena, Rachit K., et al.
Publicado: (2012)

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa
por: Hiremath, Pavana J, et al.
Publicado: (2011)

Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.)
por: Gujaria, Neha, et al.
Publicado: (2011)

Genetic mapping of legume orthologs reveals high conservation of synteny between lentil species and the sequenced genomes of Medicago and chickpea
por: Gujaria-Verma, Neha, et al.
Publicado: (2014)

Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.)
por: Thudi, Mahendar, et al.
Publicado: (2011)

Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL-hotspot” region for drought tolerance in chickpea
por: Jaganathan, Deepa, et al.
Publicado: (2014)

Molecular Mapping of QTLs for Heat Tolerance in Chickpea
por: Paul, Pronob J., et al.
Publicado: (2018)

Molecular Mapping of Flowering Time Major Genes and QTLs in Chickpea (Cicer arietinum L.)
por: Mallikarjuna, Bingi P., et al.
Publicado: (2017)

Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome
por: Sivasakthi, Kaliamoorthy, et al.
Publicado: (2018)

A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.)
por: Varshney, Rajeev K, et al.
Publicado: (2009)

Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)
por: Thudi, Mahendar, et al.
Publicado: (2016)

Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches
por: Thudi, Mahendar, et al.
Publicado: (2014)

Genome-wide association mapping of seed oligosaccharides in chickpea
por: Elango, Dinakaran, et al.
Publicado: (2022)

Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.)
por: Kale, Sandip M, et al.
Publicado: (2015)

Uneven recombination rate and linkage disequilibrium across a reference SNP map for common bean (Phaseolus vulgaris L.)
por: Blair, Matthew W., et al.
Publicado: (2018)

Correction: Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches
por: Thudi, Mahendar, et al.
Publicado: (2017)

Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome
por: Nayak, Spurthi N., et al.
Publicado: (2010)

Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.)
por: Varshney, Rajeev K., et al.
Publicado: (2014)

Phenotyping Chickpeas and Pigeonpeas for Adaptation to Drought
por: Upadhyaya, H. D., et al.
Publicado: (2012)

Linkage QTL Mapping and Genome-Wide Association Study on Resistance in Chickpea to Pythium ultimum
por: Agarwal, Chiti, et al.
Publicado: (2022)

Genome-wide association mapping of nutritional traits for designing superior chickpea varieties
por: Roorkiwal, Manish, et al.
Publicado: (2022)

Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.)
por: Bohra, Abhishek, et al.
Publicado: (2011)

Genetic mapping of QTLs for drought tolerance in chickpea (Cicer arietinum L.)
por: Kushwah, Ashutosh, et al.
Publicado: (2022)

CicArMiSatDB: the chickpea microsatellite database
por: Doddamani, Dadakhalandar, et al.
Publicado: (2014)

Translational Chickpea Genomics Consortium to Accelerate Genetic Gains in Chickpea (Cicer arietinum L.)
por: Palakurthi, Ramesh, et al.
Publicado: (2021)

Super Annigeri 1 and improved JG 74: two Fusarium wilt-resistant introgression lines developed using marker-assisted backcrossing approach in chickpea (Cicer arietinum L.)
por: Mannur, D. M., et al.
Publicado: (2018)

Integrating genomics for chickpea improvement: achievements and opportunities
por: Roorkiwal, Manish, et al.
Publicado: (2020)

Altered Expression of an FT Cluster Underlies a Major Locus Controlling Domestication-Related Changes to Chickpea Phenology and Growth Habit
por: Ortega, Raul, et al.
Publicado: (2019)

Legume Beverages from Chickpea and Lupin, as New Milk Alternatives
por: Lopes, Mariana, et al.
Publicado: (2020)

An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations
por: Bohra, Abhishek, et al.
Publicado: (2012)

Functional Dissection of the Chickpea (Cicer arietinum L.) Stay-Green Phenotype Associated with Molecular Variation at an Ortholog of Mendel’s I Gene for Cotyledon Color: Implications for Crop Production and Carotenoid Biofortification
por: Sivasakthi, Kaliamoorthy, et al.
Publicado: (2019)

Genome-Enabled Prediction Models for Yield Related Traits in Chickpea
por: Roorkiwal, Manish, et al.
Publicado: (2016)

A chickpea genetic variation map based on the sequencing of 3,366 genomes
por: Varshney, Rajeev K., et al.
Publicado: (2021)

Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)
por: Varshney, Rajeev K., et al.
Publicado: (2013)

Development and evaluation of high‐density Axiom(®) CicerSNP Array for high‐resolution genetic mapping and breeding applications in chickpea
por: Roorkiwal, Manish, et al.
Publicado: (2017)

Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea
por: Barmukh, Rutwik, et al.
Publicado: (2022)

Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea
por: Garg, Vanika, et al.
Publicado: (2018)

Development and Integration of Genome-Wide Polymorphic Microsatellite Markers onto a Reference Linkage Map for Constructing a High-Density Genetic Map of Chickpea
por: Khajuria, Yash Paul, et al.
Publicado: (2015)

Shoot traits and their relevance in terminal drought tolerance of chickpea (Cicer arietinum L.)
por: Ramamoorthy, Purushothaman, et al.
Publicado: (2016)

High density linkage mapping of genomic and transcriptomic SNPs for synteny analysis and anchoring the genome sequence of chickpea
por: Gaur, Rashmi, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_jtaarmndt6r49fgt8gjqonu86s