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Characterization of Endophytic Fungi from Acer ginnala Maxim. in an Artificial Plantation: Media Effect and Tissue-Dependent Variation
The community of endophytic fungi associated with Acer ginnala, a common tree in northeastern China, was investigated. Four media, PDA, Czapek’s, WA and Sabouraud’s, were used to inoculate explants from seeds, annual twigs and perennial twigs (xylem and bark). Media strongly affected the isolated sp...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Public Library of Science
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3466316/ https://www.ncbi.nlm.nih.gov/pubmed/23056451 http://dx.doi.org/10.1371/journal.pone.0046785 |
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author | Qi, Fenghui Jing, Tianzhong Zhan, Yaguang |
author_facet | Qi, Fenghui Jing, Tianzhong Zhan, Yaguang |
author_sort | Qi, Fenghui |
collection | PubMed |
description | The community of endophytic fungi associated with Acer ginnala, a common tree in northeastern China, was investigated. Four media, PDA, Czapek’s, WA and Sabouraud’s, were used to inoculate explants from seeds, annual twigs and perennial twigs (xylem and bark). Media strongly affected the isolated species number, but not colonization frequency (CF) or isolation frequency (IF). To investigate media effect further, a Principal Component Analysis (PCA) was done. As a result, two components accounted for 86.502% of the total variance were extracted. These two components were named as PDA-determined factor (accounted for 45.139% of the total variance) and Czapek’s-determined factor (accounted for 41.363% of the total variance), respectively. This result suggested that only two media, PDA and Czapek’s, could be used instead of all four media in this study without affecting the isolation results significantly. In total, ten taxa were isolated in this study. Alternaria sp., Phomopsis sp., Neurospora sp. and Phoma sp. were dominant endophytes while Pleosporales Incertae Sedis sp., Cladosporium sp., Trichoderma sp. and Epicoccum sp. were rare taxa. Different tissues/organs had different endophyte assemblages. All tissue/organ pairs had low Bray-Curtis indices (<0.3) except for bark and annual twigs (0.63). Compared to perennial twigs, annual twigs had a lower taxon number, lower isolate number, lower endophyte dominance and diversity indices. Seeds had distinct assemblage, lower similarity and similar low diversity indices to annual twigs. These results suggested that tissue type determines the endophyte assemblage while age determines the diversity. |
format | Online Article Text |
id | pubmed-3466316 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-34663162012-10-10 Characterization of Endophytic Fungi from Acer ginnala Maxim. in an Artificial Plantation: Media Effect and Tissue-Dependent Variation Qi, Fenghui Jing, Tianzhong Zhan, Yaguang PLoS One Research Article The community of endophytic fungi associated with Acer ginnala, a common tree in northeastern China, was investigated. Four media, PDA, Czapek’s, WA and Sabouraud’s, were used to inoculate explants from seeds, annual twigs and perennial twigs (xylem and bark). Media strongly affected the isolated species number, but not colonization frequency (CF) or isolation frequency (IF). To investigate media effect further, a Principal Component Analysis (PCA) was done. As a result, two components accounted for 86.502% of the total variance were extracted. These two components were named as PDA-determined factor (accounted for 45.139% of the total variance) and Czapek’s-determined factor (accounted for 41.363% of the total variance), respectively. This result suggested that only two media, PDA and Czapek’s, could be used instead of all four media in this study without affecting the isolation results significantly. In total, ten taxa were isolated in this study. Alternaria sp., Phomopsis sp., Neurospora sp. and Phoma sp. were dominant endophytes while Pleosporales Incertae Sedis sp., Cladosporium sp., Trichoderma sp. and Epicoccum sp. were rare taxa. Different tissues/organs had different endophyte assemblages. All tissue/organ pairs had low Bray-Curtis indices (<0.3) except for bark and annual twigs (0.63). Compared to perennial twigs, annual twigs had a lower taxon number, lower isolate number, lower endophyte dominance and diversity indices. Seeds had distinct assemblage, lower similarity and similar low diversity indices to annual twigs. These results suggested that tissue type determines the endophyte assemblage while age determines the diversity. Public Library of Science 2012-10-08 /pmc/articles/PMC3466316/ /pubmed/23056451 http://dx.doi.org/10.1371/journal.pone.0046785 Text en © 2012 Qi et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Qi, Fenghui Jing, Tianzhong Zhan, Yaguang Characterization of Endophytic Fungi from Acer ginnala Maxim. in an Artificial Plantation: Media Effect and Tissue-Dependent Variation |
title | Characterization of Endophytic Fungi from Acer ginnala Maxim. in an Artificial Plantation: Media Effect and Tissue-Dependent Variation |
title_full | Characterization of Endophytic Fungi from Acer ginnala Maxim. in an Artificial Plantation: Media Effect and Tissue-Dependent Variation |
title_fullStr | Characterization of Endophytic Fungi from Acer ginnala Maxim. in an Artificial Plantation: Media Effect and Tissue-Dependent Variation |
title_full_unstemmed | Characterization of Endophytic Fungi from Acer ginnala Maxim. in an Artificial Plantation: Media Effect and Tissue-Dependent Variation |
title_short | Characterization of Endophytic Fungi from Acer ginnala Maxim. in an Artificial Plantation: Media Effect and Tissue-Dependent Variation |
title_sort | characterization of endophytic fungi from acer ginnala maxim. in an artificial plantation: media effect and tissue-dependent variation |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3466316/ https://www.ncbi.nlm.nih.gov/pubmed/23056451 http://dx.doi.org/10.1371/journal.pone.0046785 |
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