Cargando…

MutaScope: a high-sensitivity variant caller dedicated to high-throughput PCR amplicons sequencing

Detalles Bibliográficos
Autores principales:	Yost, Shawn, Alakus, Hakan, Matsui, Hiroko, Jepsen, Kristen, Schwab, Richard, Frazer, Kelly, Harismendy, Olivier
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Oral Presentation
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3467585/ http://dx.doi.org/10.1186/1753-6561-6-S6-O22

Ejemplares similares

Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing
por: Yost, Shawn E., et al.
Publicado: (2013)

BAP1 mutation is a frequent somatic event in peritoneal malignant mesothelioma
por: Alakus, Hakan, et al.
Publicado: (2015)

Evaluation of ultra-deep targeted sequencing for personalized breast cancer care
por: Harismendy, Olivier, et al.
Publicado: (2013)

Genome-wide mutational landscape of mucinous carcinomatosis peritonei of appendiceal origin
por: Alakus, Hakan, et al.
Publicado: (2014)

Correction: Genome-wide mutational landscape of mucinous carcinomatosis peritonei of appendiceal origin
por: Alakus, Hakan, et al.
Publicado: (2014)

Accurate multiplexing and filtering for high-throughput amplicon-sequencing
por: Esling, Philippe, et al.
Publicado: (2015)

In vitro assessment of cytotoxic activities of Lachesis muta muta snake venom
por: Stransky, Stephanie, et al.
Publicado: (2018)

SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing
por: Meglécz, Emese, et al.
Publicado: (2011)

Psi-Caller: A Lightweight Short Read-Based Variant Caller With High Speed and Accuracy
por: Liu, Yadong, et al.
Publicado: (2021)

High-throughput sequencing of multiple amplicons for barcoding and integrative taxonomy
por: Cruaud, Perrine, et al.
Publicado: (2017)

AmpliconDuo: A Split-Sample Filtering Protocol for High-Throughput Amplicon Sequencing of Microbial Communities
por: Lange, Anja, et al.
Publicado: (2015)

High-Resolution Mutational Profiling Suggests the Genetic Validity of Glioblastoma Patient-Derived Pre-Clinical Models
por: Yost, Shawn E., et al.
Publicado: (2013)

The Grapevine and Wine Microbiome: Insights from High-Throughput Amplicon Sequencing
por: Morgan, Horatio H., et al.
Publicado: (2017)

A high-throughput amplicon-based method for estimating outcrossing rates
por: Jantzen, Friederike, et al.
Publicado: (2019)

Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens
por: Yost, Shawn E., et al.
Publicado: (2012)

Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing
por: Lange, Vinzenz, et al.
Publicado: (2014)

Digital fragment analysis of short tandem repeats by high‐throughput amplicon sequencing
por: Darby, Brian J., et al.
Publicado: (2016)

Computational Analysis of AmpSeq Data for Targeted, High-Throughput Genotyping of Amplicons
por: Fresnedo-Ramírez, Jonathan, et al.
Publicado: (2019)

Amplicon-Based High-Throughput Sequencing Method for Genotypic Characterization of Norovirus in Oysters
por: Fitzpatrick, Amy H., et al.
Publicado: (2023)

Comprehensive benchmarking of SNV callers for highly admixed tumor data
por: Bohnert, Regina, et al.
Publicado: (2017)

Gene-specific FACS sorting method for target selection in high-throughput amplicon sequencing
por: Sandberg, Julia, et al.
Publicado: (2010)

Comprehensive Evaluation and Optimization of Amplicon Library Preparation Methods for High-Throughput Antibody Sequencing
por: Menzel, Ulrike, et al.
Publicado: (2014)

A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies
por: Puente-Sánchez, Fernando, et al.
Publicado: (2016)

Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing
por: Tourlousse, Dieter M., et al.
Publicado: (2017)

Application of high-throughput amplicon sequencing-based SSR genotyping in genetic background screening
por: Li, Tiantian, et al.
Publicado: (2019)

NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis
por: Poncheewin, Wasin, et al.
Publicado: (2020)

High-throughput identification of synthetic riboswitches by barcode-free amplicon-sequencing in human cells
por: Strobel, Benjamin, et al.
Publicado: (2020)

A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons
por: Chateigner-Boutin, Anne-Laure, et al.
Publicado: (2007)

Complementary Use of Cultivation and High-Throughput Amplicon Sequencing Reveals High Biodiversity Within Raw Milk Microbiota
por: Breitenwieser, Franziska, et al.
Publicado: (2020)

Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons
por: Siddiqui, Huma, et al.
Publicado: (2011)

CASPER: context-aware scheme for paired-end reads from high-throughput amplicon sequencing
por: Kwon, Sunyoung, et al.
Publicado: (2014)

Microbial community analysis of the hypersaline water of the Dead Sea using high‐throughput amplicon sequencing
por: Jacob, Jacob H., et al.
Publicado: (2017)

SEED 2: a user-friendly platform for amplicon high-throughput sequencing data analyses
por: Větrovský, Tomáš, et al.
Publicado: (2018)

PVAmpliconFinder: a workflow for the identification of human papillomaviruses from high-throughput amplicon sequencing
por: Robitaille, Alexis, et al.
Publicado: (2020)

The effect of reverse transcription enzymes and conditions on high throughput amplicon sequencing of the 16S rRNA
por: Šťovíček, Adam, et al.
Publicado: (2019)

Identification of bacterial communities in extreme sites of Pakistan using high throughput barcoded amplicon sequencing
por: Fariq, Anila, et al.
Publicado: (2021)

Diversity of Endophytic Fungal Community in Leaves of Artemisia argyi Based on High-throughput Amplicon Sequencing
por: WU, QIU-FANG, et al.
Publicado: (2021)

Identification of grapevine clones via high-throughput amplicon sequencing: a proof-of-concept study
por: Urra, Claudio, et al.
Publicado: (2023)

A high‐throughput amplicon sequencing approach for population‐wide species diversity and composition survey
por: Tay, Wee Tek, et al.
Publicado: (2022)

Mutational Profiling Can Establish Clonal or Independent Origin in Synchronous Bilateral Breast and Other Tumors
por: Bao, Lei, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_d7bmtuir4mdcegob7ekuven8ih