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SPARQL Assist language-neutral query composer

BACKGROUND: SPARQL query composition is difficult for the lay-person, and even the experienced bioinformatician in cases where the data model is unfamiliar. Moreover, established best-practices and internationalization concerns dictate that the identifiers for ontological terms should be opaque rath...

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Detalles Bibliográficos
Autores principales: McCarthy, Luke, Vandervalk, Ben, Wilkinson, Mark
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3471353/
https://www.ncbi.nlm.nih.gov/pubmed/22373327
http://dx.doi.org/10.1186/1471-2105-13-S1-S2
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author McCarthy, Luke
Vandervalk, Ben
Wilkinson, Mark
author_facet McCarthy, Luke
Vandervalk, Ben
Wilkinson, Mark
author_sort McCarthy, Luke
collection PubMed
description BACKGROUND: SPARQL query composition is difficult for the lay-person, and even the experienced bioinformatician in cases where the data model is unfamiliar. Moreover, established best-practices and internationalization concerns dictate that the identifiers for ontological terms should be opaque rather than human-readable, which further complicates the task of synthesizing queries manually. RESULTS: We present SPARQL Assist: a Web application that addresses these issues by providing context-sensitive type-ahead completion during SPARQL query construction. Ontological terms are suggested using their multi-lingual labels and descriptions, leveraging existing support for internationalization and language-neutrality. Moreover, the system utilizes the semantics embedded in ontologies, and within the query itself, to help prioritize the most likely suggestions. CONCLUSIONS: To ensure success, the Semantic Web must be easily available to all users, regardless of locale, training, or preferred language. By enhancing support for internationalization, and moreover by simplifying the manual construction of SPARQL queries through the use of controlled-natural-language interfaces, we believe we have made some early steps towards simplifying access to Semantic Web resources.
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spelling pubmed-34713532012-10-18 SPARQL Assist language-neutral query composer McCarthy, Luke Vandervalk, Ben Wilkinson, Mark BMC Bioinformatics Research BACKGROUND: SPARQL query composition is difficult for the lay-person, and even the experienced bioinformatician in cases where the data model is unfamiliar. Moreover, established best-practices and internationalization concerns dictate that the identifiers for ontological terms should be opaque rather than human-readable, which further complicates the task of synthesizing queries manually. RESULTS: We present SPARQL Assist: a Web application that addresses these issues by providing context-sensitive type-ahead completion during SPARQL query construction. Ontological terms are suggested using their multi-lingual labels and descriptions, leveraging existing support for internationalization and language-neutrality. Moreover, the system utilizes the semantics embedded in ontologies, and within the query itself, to help prioritize the most likely suggestions. CONCLUSIONS: To ensure success, the Semantic Web must be easily available to all users, regardless of locale, training, or preferred language. By enhancing support for internationalization, and moreover by simplifying the manual construction of SPARQL queries through the use of controlled-natural-language interfaces, we believe we have made some early steps towards simplifying access to Semantic Web resources. BioMed Central 2012-01-25 /pmc/articles/PMC3471353/ /pubmed/22373327 http://dx.doi.org/10.1186/1471-2105-13-S1-S2 Text en Copyright ©2012 McCarthy et al. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
McCarthy, Luke
Vandervalk, Ben
Wilkinson, Mark
SPARQL Assist language-neutral query composer
title SPARQL Assist language-neutral query composer
title_full SPARQL Assist language-neutral query composer
title_fullStr SPARQL Assist language-neutral query composer
title_full_unstemmed SPARQL Assist language-neutral query composer
title_short SPARQL Assist language-neutral query composer
title_sort sparql assist language-neutral query composer
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3471353/
https://www.ncbi.nlm.nih.gov/pubmed/22373327
http://dx.doi.org/10.1186/1471-2105-13-S1-S2
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