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DNA Extraction from Museum Specimens of Parasitic Hymenoptera

At the same time that molecular researchers are improving techniques to extract DNA from museum specimens, this increased demand for access to museum specimens has created tension between the need to preserve specimens for maintaining collections and morphological research and the desire to conduct...

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Autores principales: Andersen, Jeremy C., Mills, Nicholas J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3471897/
https://www.ncbi.nlm.nih.gov/pubmed/23077493
http://dx.doi.org/10.1371/journal.pone.0045549
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author Andersen, Jeremy C.
Mills, Nicholas J.
author_facet Andersen, Jeremy C.
Mills, Nicholas J.
author_sort Andersen, Jeremy C.
collection PubMed
description At the same time that molecular researchers are improving techniques to extract DNA from museum specimens, this increased demand for access to museum specimens has created tension between the need to preserve specimens for maintaining collections and morphological research and the desire to conduct molecular analyses. To address these concerns, we examined the suitability of non-invasive DNA extraction techniques on three species of parasitic Hymenoptera (Braconidae), and test the effects of body size (parasitoid species), age (time since collection), and DNA concentration from each extract on the probability of amplifying meaningful fragments of two commonly used genetic loci. We found that age was a significant factor for determining the probability of success for sequencing both 28S and COI fragments. While the size of the braconid parasitoids significantly affected the total amount of extracted DNA, neither size nor DNA concentration were significant factors for the amplification of either gene region. We also tested several primer combinations of various lengths, but were unable to amplify fragments longer than ∼150 base pairs. These short fragments of 28S and COI were however sufficient for species identification, and for the discovery of within species genetic variation.
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spelling pubmed-34718972012-10-17 DNA Extraction from Museum Specimens of Parasitic Hymenoptera Andersen, Jeremy C. Mills, Nicholas J. PLoS One Research Article At the same time that molecular researchers are improving techniques to extract DNA from museum specimens, this increased demand for access to museum specimens has created tension between the need to preserve specimens for maintaining collections and morphological research and the desire to conduct molecular analyses. To address these concerns, we examined the suitability of non-invasive DNA extraction techniques on three species of parasitic Hymenoptera (Braconidae), and test the effects of body size (parasitoid species), age (time since collection), and DNA concentration from each extract on the probability of amplifying meaningful fragments of two commonly used genetic loci. We found that age was a significant factor for determining the probability of success for sequencing both 28S and COI fragments. While the size of the braconid parasitoids significantly affected the total amount of extracted DNA, neither size nor DNA concentration were significant factors for the amplification of either gene region. We also tested several primer combinations of various lengths, but were unable to amplify fragments longer than ∼150 base pairs. These short fragments of 28S and COI were however sufficient for species identification, and for the discovery of within species genetic variation. Public Library of Science 2012-10-15 /pmc/articles/PMC3471897/ /pubmed/23077493 http://dx.doi.org/10.1371/journal.pone.0045549 Text en © 2012 Andersen and Mills http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Andersen, Jeremy C.
Mills, Nicholas J.
DNA Extraction from Museum Specimens of Parasitic Hymenoptera
title DNA Extraction from Museum Specimens of Parasitic Hymenoptera
title_full DNA Extraction from Museum Specimens of Parasitic Hymenoptera
title_fullStr DNA Extraction from Museum Specimens of Parasitic Hymenoptera
title_full_unstemmed DNA Extraction from Museum Specimens of Parasitic Hymenoptera
title_short DNA Extraction from Museum Specimens of Parasitic Hymenoptera
title_sort dna extraction from museum specimens of parasitic hymenoptera
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3471897/
https://www.ncbi.nlm.nih.gov/pubmed/23077493
http://dx.doi.org/10.1371/journal.pone.0045549
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