Cargando…

Triple hydrogen bonding in a circular arrangement: ab initio, DFT and first-principles MD studies of tris-hydroxyaryl enamines

First-principles Car-Parrinello molecular dynamics, ab initio (MP2) and density functional schemes have been used to explore the tautomeric equilibrium in three tris(amino(R)methylidene)cyclohexane-1,3,5-triones (R = hydrogen, methyl or phenyl group). The dynamic nature of the cyclic hydrogen bondin...

Descripción completa

Detalles Bibliográficos
Autores principales: Martyniak, Agata, Panek, Jarosław, Jezierska-Mazzarello, Aneta, Filarowski, Aleksander
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3474916/
https://www.ncbi.nlm.nih.gov/pubmed/22955961
http://dx.doi.org/10.1007/s10822-012-9597-3
_version_ 1782246861010108416
author Martyniak, Agata
Panek, Jarosław
Jezierska-Mazzarello, Aneta
Filarowski, Aleksander
author_facet Martyniak, Agata
Panek, Jarosław
Jezierska-Mazzarello, Aneta
Filarowski, Aleksander
author_sort Martyniak, Agata
collection PubMed
description First-principles Car-Parrinello molecular dynamics, ab initio (MP2) and density functional schemes have been used to explore the tautomeric equilibrium in three tris(amino(R)methylidene)cyclohexane-1,3,5-triones (R = hydrogen, methyl or phenyl group). The dynamic nature of the cyclic hydrogen bonding has been studied by the first-principles MD method. The comparison of the results obtained by aforesaid methods has been accomplished on the basis of calculations of structural and spectroscopic characteristics of the compounds. The conformational analysis of the studied compounds has been carried out at the MP2/6-31+G(d,p) and B3LYP/6-31+G(d,p) levels of theory. The influence of steric and electronic effects on the cyclic hydrogen bonding has been analysed. The extent of the proton delocalization has been modified by the substituents according to the sequence: hydrogen < phenyl < methyl. This fact is verified by the spectroscopic and structural data as well as the energy potential curve. A prevalence of the keto-enamine tautomeric form has been observed in the static ab initio and DFT models, and confirmed by the first-principles MD. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10822-012-9597-3) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-3474916
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher Springer Netherlands
record_format MEDLINE/PubMed
spelling pubmed-34749162012-10-18 Triple hydrogen bonding in a circular arrangement: ab initio, DFT and first-principles MD studies of tris-hydroxyaryl enamines Martyniak, Agata Panek, Jarosław Jezierska-Mazzarello, Aneta Filarowski, Aleksander J Comput Aided Mol Des Article First-principles Car-Parrinello molecular dynamics, ab initio (MP2) and density functional schemes have been used to explore the tautomeric equilibrium in three tris(amino(R)methylidene)cyclohexane-1,3,5-triones (R = hydrogen, methyl or phenyl group). The dynamic nature of the cyclic hydrogen bonding has been studied by the first-principles MD method. The comparison of the results obtained by aforesaid methods has been accomplished on the basis of calculations of structural and spectroscopic characteristics of the compounds. The conformational analysis of the studied compounds has been carried out at the MP2/6-31+G(d,p) and B3LYP/6-31+G(d,p) levels of theory. The influence of steric and electronic effects on the cyclic hydrogen bonding has been analysed. The extent of the proton delocalization has been modified by the substituents according to the sequence: hydrogen < phenyl < methyl. This fact is verified by the spectroscopic and structural data as well as the energy potential curve. A prevalence of the keto-enamine tautomeric form has been observed in the static ab initio and DFT models, and confirmed by the first-principles MD. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10822-012-9597-3) contains supplementary material, which is available to authorized users. Springer Netherlands 2012-09-07 2012 /pmc/articles/PMC3474916/ /pubmed/22955961 http://dx.doi.org/10.1007/s10822-012-9597-3 Text en © The Author(s) 2012 https://creativecommons.org/licenses/by/4.0/ This article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.
spellingShingle Article
Martyniak, Agata
Panek, Jarosław
Jezierska-Mazzarello, Aneta
Filarowski, Aleksander
Triple hydrogen bonding in a circular arrangement: ab initio, DFT and first-principles MD studies of tris-hydroxyaryl enamines
title Triple hydrogen bonding in a circular arrangement: ab initio, DFT and first-principles MD studies of tris-hydroxyaryl enamines
title_full Triple hydrogen bonding in a circular arrangement: ab initio, DFT and first-principles MD studies of tris-hydroxyaryl enamines
title_fullStr Triple hydrogen bonding in a circular arrangement: ab initio, DFT and first-principles MD studies of tris-hydroxyaryl enamines
title_full_unstemmed Triple hydrogen bonding in a circular arrangement: ab initio, DFT and first-principles MD studies of tris-hydroxyaryl enamines
title_short Triple hydrogen bonding in a circular arrangement: ab initio, DFT and first-principles MD studies of tris-hydroxyaryl enamines
title_sort triple hydrogen bonding in a circular arrangement: ab initio, dft and first-principles md studies of tris-hydroxyaryl enamines
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3474916/
https://www.ncbi.nlm.nih.gov/pubmed/22955961
http://dx.doi.org/10.1007/s10822-012-9597-3
work_keys_str_mv AT martyniakagata triplehydrogenbondinginacirculararrangementabinitiodftandfirstprinciplesmdstudiesoftrishydroxyarylenamines
AT panekjarosław triplehydrogenbondinginacirculararrangementabinitiodftandfirstprinciplesmdstudiesoftrishydroxyarylenamines
AT jezierskamazzarelloaneta triplehydrogenbondinginacirculararrangementabinitiodftandfirstprinciplesmdstudiesoftrishydroxyarylenamines
AT filarowskialeksander triplehydrogenbondinginacirculararrangementabinitiodftandfirstprinciplesmdstudiesoftrishydroxyarylenamines