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Evaluating the Adequacy of Gravity Models as a Description of Human Mobility for Epidemic Modelling

Gravity models have a long history of use in describing and forecasting the movements of people as well as goods and services, making them a natural basis for disease transmission rates over distance. In agent-based micro-simulations, gravity models can be directly used to represent movement of indi...

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Autores principales: Truscott, James, Ferguson, Neil M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3475681/
https://www.ncbi.nlm.nih.gov/pubmed/23093917
http://dx.doi.org/10.1371/journal.pcbi.1002699
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author Truscott, James
Ferguson, Neil M.
author_facet Truscott, James
Ferguson, Neil M.
author_sort Truscott, James
collection PubMed
description Gravity models have a long history of use in describing and forecasting the movements of people as well as goods and services, making them a natural basis for disease transmission rates over distance. In agent-based micro-simulations, gravity models can be directly used to represent movement of individuals and hence disease. In this paper, we consider a range of gravity models as fits to movement data from the UK and the US. We examine the ability of synthetic networks generated from fitted models to match those from the data in terms of epidemic behaviour; in particular, times to first infection. For both datasets, best fits are obtained with a two-piece ‘matched’ power law distance distribution. Epidemics on synthetic UK networks match well those on data networks across all but the smallest nodes for a range of aggregation levels. We derive an expression for time to infection between nodes in terms of epidemiological and network parameters which illuminates the influence of network clustering in spread across networks and suggests an approximate relationship between the log-likelihood deviance of model fit and the match times to infection between synthetic and data networks. On synthetic US networks, the match in epidemic behaviour is initially poor and sensitive to the initially infected node. Analysis of times to infection indicates a failure of models to capture infrequent long-range contact between large nodes. An assortative model based on node population size captures this heterogeneity, considerably improving the epidemiological match between synthetic and data networks.
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spelling pubmed-34756812012-10-23 Evaluating the Adequacy of Gravity Models as a Description of Human Mobility for Epidemic Modelling Truscott, James Ferguson, Neil M. PLoS Comput Biol Research Article Gravity models have a long history of use in describing and forecasting the movements of people as well as goods and services, making them a natural basis for disease transmission rates over distance. In agent-based micro-simulations, gravity models can be directly used to represent movement of individuals and hence disease. In this paper, we consider a range of gravity models as fits to movement data from the UK and the US. We examine the ability of synthetic networks generated from fitted models to match those from the data in terms of epidemic behaviour; in particular, times to first infection. For both datasets, best fits are obtained with a two-piece ‘matched’ power law distance distribution. Epidemics on synthetic UK networks match well those on data networks across all but the smallest nodes for a range of aggregation levels. We derive an expression for time to infection between nodes in terms of epidemiological and network parameters which illuminates the influence of network clustering in spread across networks and suggests an approximate relationship between the log-likelihood deviance of model fit and the match times to infection between synthetic and data networks. On synthetic US networks, the match in epidemic behaviour is initially poor and sensitive to the initially infected node. Analysis of times to infection indicates a failure of models to capture infrequent long-range contact between large nodes. An assortative model based on node population size captures this heterogeneity, considerably improving the epidemiological match between synthetic and data networks. Public Library of Science 2012-10-18 /pmc/articles/PMC3475681/ /pubmed/23093917 http://dx.doi.org/10.1371/journal.pcbi.1002699 Text en © 2012 Truscott, Ferguson http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Truscott, James
Ferguson, Neil M.
Evaluating the Adequacy of Gravity Models as a Description of Human Mobility for Epidemic Modelling
title Evaluating the Adequacy of Gravity Models as a Description of Human Mobility for Epidemic Modelling
title_full Evaluating the Adequacy of Gravity Models as a Description of Human Mobility for Epidemic Modelling
title_fullStr Evaluating the Adequacy of Gravity Models as a Description of Human Mobility for Epidemic Modelling
title_full_unstemmed Evaluating the Adequacy of Gravity Models as a Description of Human Mobility for Epidemic Modelling
title_short Evaluating the Adequacy of Gravity Models as a Description of Human Mobility for Epidemic Modelling
title_sort evaluating the adequacy of gravity models as a description of human mobility for epidemic modelling
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3475681/
https://www.ncbi.nlm.nih.gov/pubmed/23093917
http://dx.doi.org/10.1371/journal.pcbi.1002699
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