Cargando…
Genomic Transformation of the Picoeukaryote Ostreococcus tauri
Common problems hindering rapid progress in Plant Sciences include cellular, tissue and whole organism complexity, and notably the high level of genomic redundancy affecting simple genetics in higher plants. The novel model organism Ostreococcus tauri is the smallest free-living eukaryote known to d...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MyJove Corporation
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3476405/ https://www.ncbi.nlm.nih.gov/pubmed/22825291 http://dx.doi.org/10.3791/4074 |
_version_ | 1782247094244868096 |
---|---|
author | van Ooijen, Gerben Knox, Kirsten Kis, Katalin Bouget, François-Yves Millar, Andrew J. |
author_facet | van Ooijen, Gerben Knox, Kirsten Kis, Katalin Bouget, François-Yves Millar, Andrew J. |
author_sort | van Ooijen, Gerben |
collection | PubMed |
description | Common problems hindering rapid progress in Plant Sciences include cellular, tissue and whole organism complexity, and notably the high level of genomic redundancy affecting simple genetics in higher plants. The novel model organism Ostreococcus tauri is the smallest free-living eukaryote known to date, and possesses a greatly reduced genome size and cellular complexity(1,2), manifested by the presence of just one of most organelles (mitochondrion, chloroplast, golgi stack) per cell, and a genome containing only ~8000 genes. Furthermore, the combination of unicellularity and easy culture provides a platform amenable to chemical biology approaches. Recently, Ostreococcus has been successfully employed to study basic mechanisms underlying circadian timekeeping(3-6). Results from this model organism have impacted not only plant science, but also mammalian biology(7). This example highlights how rapid experimentation in a simple eukaryote from the green lineage can accelerate research in more complex organisms by generating testable hypotheses using methods technically feasible only in this background of reduced complexity. Knowledge of a genome and the possibility to modify genes are essential tools in any model species. Genomic(1), Transcriptomic(8), and Proteomic(9) information for this species is freely available, whereas the previously reported methods(6,10) to genetically transform Ostreococcus are known to few laboratories worldwide. In this article, the experimental methods to genetically transform this novel model organism with an overexpression construct by means of electroporation are outlined in detail, as well as the method of inclusion of transformed cells in low percentage agarose to allow selection of transformed lines originating from a single transformed cell. Following the successful application of Ostreococcus to circadian research, growing interest in Ostreococcus can be expected from diverse research areas within and outside plant sciences, including biotechnological areas. Researchers from a broad range of biological and medical sciences that work on conserved biochemical pathways may consider pursuing research in Ostreococcus, free from the genomic and organismal complexity of larger model species. |
format | Online Article Text |
id | pubmed-3476405 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | MyJove Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-34764052012-10-24 Genomic Transformation of the Picoeukaryote Ostreococcus tauri van Ooijen, Gerben Knox, Kirsten Kis, Katalin Bouget, François-Yves Millar, Andrew J. J Vis Exp Microbiology Common problems hindering rapid progress in Plant Sciences include cellular, tissue and whole organism complexity, and notably the high level of genomic redundancy affecting simple genetics in higher plants. The novel model organism Ostreococcus tauri is the smallest free-living eukaryote known to date, and possesses a greatly reduced genome size and cellular complexity(1,2), manifested by the presence of just one of most organelles (mitochondrion, chloroplast, golgi stack) per cell, and a genome containing only ~8000 genes. Furthermore, the combination of unicellularity and easy culture provides a platform amenable to chemical biology approaches. Recently, Ostreococcus has been successfully employed to study basic mechanisms underlying circadian timekeeping(3-6). Results from this model organism have impacted not only plant science, but also mammalian biology(7). This example highlights how rapid experimentation in a simple eukaryote from the green lineage can accelerate research in more complex organisms by generating testable hypotheses using methods technically feasible only in this background of reduced complexity. Knowledge of a genome and the possibility to modify genes are essential tools in any model species. Genomic(1), Transcriptomic(8), and Proteomic(9) information for this species is freely available, whereas the previously reported methods(6,10) to genetically transform Ostreococcus are known to few laboratories worldwide. In this article, the experimental methods to genetically transform this novel model organism with an overexpression construct by means of electroporation are outlined in detail, as well as the method of inclusion of transformed cells in low percentage agarose to allow selection of transformed lines originating from a single transformed cell. Following the successful application of Ostreococcus to circadian research, growing interest in Ostreococcus can be expected from diverse research areas within and outside plant sciences, including biotechnological areas. Researchers from a broad range of biological and medical sciences that work on conserved biochemical pathways may consider pursuing research in Ostreococcus, free from the genomic and organismal complexity of larger model species. MyJove Corporation 2012-07-13 /pmc/articles/PMC3476405/ /pubmed/22825291 http://dx.doi.org/10.3791/4074 Text en Copyright © 2012, Journal of Visualized Experiments http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visithttp://creativecommons.org/licenses/by-nc-nd/3.0/ |
spellingShingle | Microbiology van Ooijen, Gerben Knox, Kirsten Kis, Katalin Bouget, François-Yves Millar, Andrew J. Genomic Transformation of the Picoeukaryote Ostreococcus tauri |
title | Genomic Transformation of the Picoeukaryote Ostreococcus tauri |
title_full | Genomic Transformation of the Picoeukaryote Ostreococcus tauri |
title_fullStr | Genomic Transformation of the Picoeukaryote Ostreococcus tauri |
title_full_unstemmed | Genomic Transformation of the Picoeukaryote Ostreococcus tauri |
title_short | Genomic Transformation of the Picoeukaryote Ostreococcus tauri |
title_sort | genomic transformation of the picoeukaryote ostreococcus tauri |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3476405/ https://www.ncbi.nlm.nih.gov/pubmed/22825291 http://dx.doi.org/10.3791/4074 |
work_keys_str_mv | AT vanooijengerben genomictransformationofthepicoeukaryoteostreococcustauri AT knoxkirsten genomictransformationofthepicoeukaryoteostreococcustauri AT kiskatalin genomictransformationofthepicoeukaryoteostreococcustauri AT bougetfrancoisyves genomictransformationofthepicoeukaryoteostreococcustauri AT millarandrewj genomictransformationofthepicoeukaryoteostreococcustauri |