Cargando…

Correlation analysis of the side-chains conformational distribution in bound and unbound proteins

BACKGROUND: Protein interactions play a key role in life processes. Characterization of conformational properties of protein-protein interactions is important for understanding the mechanisms of protein association. The rapidly increasing amount of experimentally determined structures of proteins an...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kirys, Tatsiana, Ruvinsky, Anatoly M, Tuzikov, Alexander V, Vakser, Ilya A
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3479416/ https://www.ncbi.nlm.nih.gov/pubmed/22984947 http://dx.doi.org/10.1186/1471-2105-13-236

Ejemplares similares

Simulated unbound structures for benchmarking of protein docking in the Dockground resource
por: Kirys, Tatsiana, et al.
Publicado: (2015)

Estimation of Bounded and Unbounded Trajectories in Diffusion MRI
por: Ning, Lipeng, et al.
Publicado: (2016)

Predicting binding sites from unbound versus bound protein structures
por: Clark, Jordan J., et al.
Publicado: (2020)

On Side-Chain Conformational Entropy of Proteins
por: Zhang, Jinfeng, et al.
Publicado: (2006)

Quantum bound states where the classical motion is unbounded
por: Gunn, J M F
Publicado: (1984)

PAC-Bayes Unleashed: Generalisation Bounds with Unbounded Losses
por: Haddouche, Maxime, et al.
Publicado: (2021)

Comment on “Relative Diffusivities of Bound and Unbound Protein Can Control Chemotactic Directionality”
por: Agudo-Canalejo, Jaime, et al.
Publicado: (2022)

Structural insights into conformational switching in latency-associated peptide between transforming growth factor β-1 bound and unbound states
por: Stachowski, Timothy R., et al.
Publicado: (2020)

The Laplace equation: boundary value problems on bounded and unbounded Lipschitz domains
por: Medková, Dagmar
Publicado: (2018)

Proper modelling of ligand binding requires an ensemble of bound and unbound states
por: Pearce, Nicholas M., et al.
Publicado: (2017)

Fast and accurate prediction of protein side-chain conformations
por: Liang, Shide, et al.
Publicado: (2011)

Quantifying side-chain conformational variations in protein structure
por: Miao, Zhichao, et al.
Publicado: (2016)

Analysis of the Structural Dynamics of Proteins in the Ligand-Unbound and -Bound States by Diffracted X-ray Tracking
por: Oda, Masayuki
Publicado: (2023)

A modular approach to map out the conformational landscapes of unbound intrinsically disordered proteins
por: Luong, Thinh D. N., et al.
Publicado: (2022)

The dimensionality of niche space allows bounded and unbounded processes to jointly influence diversification
por: Larcombe, Matthew J., et al.
Publicado: (2018)

ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorder
por: Lobanov, Michail Yu., et al.
Publicado: (2010)

Ligand binding remodels protein side-chain conformational heterogeneity
por: Wankowicz, Stephanie A, et al.
Publicado: (2022)

Mathematics unbound
por: Parshall, Karen Hunger, et al.
Publicado: (2002)

BUDDY-system: A web site for constructing a dataset of protein pairs between ligand-bound and unbound states
por: Morita, Mizuki, et al.
Publicado: (2011)

Fitmunk: improving protein structures by accurate, automatic modeling of side-chain conformations
por: Porebski, Przemyslaw Jerzy, et al.
Publicado: (2016)

Changes in conformational dynamics of basic side chains upon protein–DNA association
por: Esadze, Alexandre, et al.
Publicado: (2016)

An Algorithm for Computing Side Chain Conformational Variations of a Protein Tunnel/Channel
por: Seo, Udeok, et al.
Publicado: (2018)

Modeling Structural Constraints on Protein Evolution via Side-Chain Conformational States
por: Perron, Umberto, et al.
Publicado: (2019)

Side Chain Conformational Averaging in Human Dihydrofolate Reductase
por: Tuttle, Lisa M., et al.
Publicado: (2014)

Influence of Side Chain Conformation on the Activity of Glycosidase Inhibitors
por: Tseng, Po‐Sen, et al.
Publicado: (2023)

Side Chain Conformational Distributions of a Small Protein Derived from Model-Free Analysis of a Large Set of Residual Dipolar Couplings
por: Li, Fang, et al.
Publicado: (2015)

Potentials Unbounded Below
por: Curtright, Thomas
Publicado: (2010)

Real-World Objects Are Represented in Visual Long-Term Memory Both as Unbound Features and as Bound Objects
por: Kuhbandner, Christof
Publicado: (2020)

Offset-FA: A Uniform Method to Handle Both Unbounded and Bounded Repetitions in Regular Expression Matching
por: Xu, Chengcheng, et al.
Publicado: (2022)

The effect of cardiolipin side chain composition on cytochrome c protein conformation and peroxidase activity
por: Wilkinson, Jennifer A., et al.
Publicado: (2021)

GRAMM-X public web server for protein–protein docking
por: Tovchigrechko, Andrey, et al.
Publicado: (2006)

Ethnography unbound : power and resistance in the modern metropolis /
Publicado: (1991)

Unbounded linear operators : theory and applications
por: Goldberg, Seymour 1928-
Publicado: (1996)

DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking
por: Liu, Shiyong, et al.
Publicado: (2011)

Unbound states in quantum heterostructures
por: Ferreira, R, et al.
Publicado: (2006)

Unbounding the future: the nanotechnology revolution
por: Drexler, Eric K, et al.
Publicado: (1991)

Unbounded non-commutative integration
por: Jurzak, J P
Publicado: (1985)

Unbounded solutions of models for glycolysis
por: Brechmann, Pia, et al.
Publicado: (2021)

Geography unbound : French geographic science from Cassini to Humboldt /
por: Godlewska, Anne
Publicado: (1999)

Accuracy of Protein-Protein Binding Sites in High-Throughput Template-Based Modeling
por: Kundrotas, Petras J., et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_n30nalb9j264m87ki78m98e1l9