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CING: an integrated residue-based structure validation program suite

We present a suite of programs, named CING for Common Interface for NMR Structure Generation that provides for a residue-based, integrated validation of the structural NMR ensemble in conjunction with the experimental restraints and other input data. External validation programs and new internal val...

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Detalles Bibliográficos
Autores principales: Doreleijers, Jurgen F., Sousa da Silva, Alan W., Krieger, Elmar, Nabuurs, Sander B., Spronk, Christian A. E. M., Stevens, Tim J., Vranken, Wim F., Vriend, Gert, Vuister, Geerten W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483101/
https://www.ncbi.nlm.nih.gov/pubmed/22986687
http://dx.doi.org/10.1007/s10858-012-9669-7
Descripción
Sumario:We present a suite of programs, named CING for Common Interface for NMR Structure Generation that provides for a residue-based, integrated validation of the structural NMR ensemble in conjunction with the experimental restraints and other input data. External validation programs and new internal validation routines compare the NMR-derived models with empirical data, measured chemical shifts, distance- and dihedral restraints and the results are visualized in a dynamic Web 2.0 report. A red–orange–green score is used for residues and restraints to direct the user to those critiques that warrant further investigation. Overall green scores below ~20 % accompanied by red scores over ~50 % are strongly indicative of poorly modelled structures. The publically accessible, secure iCing webserver (https://nmr.le.ac.uk) allows individual users to upload the NMR data and run a CING validation analysis. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-012-9669-7) contains supplementary material, which is available to authorized users.