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Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks

Intricate and interconnected pathways modulate longevity, but screens to identify the components of these pathways have not been saturating. Because biological processes are often executed by protein complexes and fine-tuned by regulatory factors, the first-order protein-protein interactors of known...

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Autores principales: Tacutu, Robi, Shore, David E., Budovsky, Arie, de Magalhães, João Pedro, Ruvkun, Gary, Fraifeld, Vadim E., Curran, Sean P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483217/
https://www.ncbi.nlm.nih.gov/pubmed/23144747
http://dx.doi.org/10.1371/journal.pone.0048282
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author Tacutu, Robi
Shore, David E.
Budovsky, Arie
de Magalhães, João Pedro
Ruvkun, Gary
Fraifeld, Vadim E.
Curran, Sean P.
author_facet Tacutu, Robi
Shore, David E.
Budovsky, Arie
de Magalhães, João Pedro
Ruvkun, Gary
Fraifeld, Vadim E.
Curran, Sean P.
author_sort Tacutu, Robi
collection PubMed
description Intricate and interconnected pathways modulate longevity, but screens to identify the components of these pathways have not been saturating. Because biological processes are often executed by protein complexes and fine-tuned by regulatory factors, the first-order protein-protein interactors of known longevity genes are likely to participate in the regulation of longevity. Data-rich maps of protein interactions have been established for many cardinal organisms such as yeast, worms, and humans. We propose that these interaction maps could be mined for the identification of new putative regulators of longevity. For this purpose, we have constructed longevity networks in both humans and worms. We reasoned that the essential first-order interactors of known longevity-associated genes in these networks are more likely to have longevity phenotypes than randomly chosen genes. We have used C. elegans to determine whether post-developmental inactivation of these essential genes modulates lifespan. Our results suggest that the worm and human longevity networks are functionally relevant and possess a high predictive power for identifying new longevity regulators.
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spelling pubmed-34832172012-11-09 Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks Tacutu, Robi Shore, David E. Budovsky, Arie de Magalhães, João Pedro Ruvkun, Gary Fraifeld, Vadim E. Curran, Sean P. PLoS One Research Article Intricate and interconnected pathways modulate longevity, but screens to identify the components of these pathways have not been saturating. Because biological processes are often executed by protein complexes and fine-tuned by regulatory factors, the first-order protein-protein interactors of known longevity genes are likely to participate in the regulation of longevity. Data-rich maps of protein interactions have been established for many cardinal organisms such as yeast, worms, and humans. We propose that these interaction maps could be mined for the identification of new putative regulators of longevity. For this purpose, we have constructed longevity networks in both humans and worms. We reasoned that the essential first-order interactors of known longevity-associated genes in these networks are more likely to have longevity phenotypes than randomly chosen genes. We have used C. elegans to determine whether post-developmental inactivation of these essential genes modulates lifespan. Our results suggest that the worm and human longevity networks are functionally relevant and possess a high predictive power for identifying new longevity regulators. Public Library of Science 2012-10-29 /pmc/articles/PMC3483217/ /pubmed/23144747 http://dx.doi.org/10.1371/journal.pone.0048282 Text en © 2012 Tacutu et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Tacutu, Robi
Shore, David E.
Budovsky, Arie
de Magalhães, João Pedro
Ruvkun, Gary
Fraifeld, Vadim E.
Curran, Sean P.
Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks
title Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks
title_full Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks
title_fullStr Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks
title_full_unstemmed Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks
title_short Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks
title_sort prediction of c. elegans longevity genes by human and worm longevity networks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483217/
https://www.ncbi.nlm.nih.gov/pubmed/23144747
http://dx.doi.org/10.1371/journal.pone.0048282
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