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Reconstruction of Sugar Metabolic Pathways of Giardia lamblia
Giardia lamblia is an “important” pathogen of humans, but as a diplomonad excavate it is evolutionarily distant from other eukaryotes and relatively little is known about its core metabolic pathways. KEGG, the widely referenced site for providing information of metabolism, does not yet include many...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483818/ https://www.ncbi.nlm.nih.gov/pubmed/23119161 http://dx.doi.org/10.1155/2012/980829 |
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author | Han, Jian Collins, Lesley J. |
author_facet | Han, Jian Collins, Lesley J. |
author_sort | Han, Jian |
collection | PubMed |
description | Giardia lamblia is an “important” pathogen of humans, but as a diplomonad excavate it is evolutionarily distant from other eukaryotes and relatively little is known about its core metabolic pathways. KEGG, the widely referenced site for providing information of metabolism, does not yet include many enzymes from Giardia species. Here we identify Giardia's core sugar metabolism using standard bioinformatic approaches. By comparing Giardia proteomes with known enzymes from other species, we have identified enzymes in the glycolysis pathway, as well as some enzymes involved in the TCA cycle and oxidative phosphorylation. However, the majority of enzymes from the latter two pathways were not identifiable, indicating the likely absence of these functionalities. We have also found enzymes from the Giardia glycolysis pathway that appear more similar to those from bacteria. Because these enzymes are different from those found in mammals, the host organisms for Giardia, we raise the possibility that these bacteria-like enzymes could be novel drug targets for treating Giardia infections. |
format | Online Article Text |
id | pubmed-3483818 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-34838182012-11-01 Reconstruction of Sugar Metabolic Pathways of Giardia lamblia Han, Jian Collins, Lesley J. Int J Proteomics Research Article Giardia lamblia is an “important” pathogen of humans, but as a diplomonad excavate it is evolutionarily distant from other eukaryotes and relatively little is known about its core metabolic pathways. KEGG, the widely referenced site for providing information of metabolism, does not yet include many enzymes from Giardia species. Here we identify Giardia's core sugar metabolism using standard bioinformatic approaches. By comparing Giardia proteomes with known enzymes from other species, we have identified enzymes in the glycolysis pathway, as well as some enzymes involved in the TCA cycle and oxidative phosphorylation. However, the majority of enzymes from the latter two pathways were not identifiable, indicating the likely absence of these functionalities. We have also found enzymes from the Giardia glycolysis pathway that appear more similar to those from bacteria. Because these enzymes are different from those found in mammals, the host organisms for Giardia, we raise the possibility that these bacteria-like enzymes could be novel drug targets for treating Giardia infections. Hindawi Publishing Corporation 2012 2012-10-18 /pmc/articles/PMC3483818/ /pubmed/23119161 http://dx.doi.org/10.1155/2012/980829 Text en Copyright © 2012 J. Han and L. J. Collins. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Han, Jian Collins, Lesley J. Reconstruction of Sugar Metabolic Pathways of Giardia lamblia |
title | Reconstruction of Sugar Metabolic Pathways of Giardia lamblia
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title_full | Reconstruction of Sugar Metabolic Pathways of Giardia lamblia
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title_fullStr | Reconstruction of Sugar Metabolic Pathways of Giardia lamblia
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title_full_unstemmed | Reconstruction of Sugar Metabolic Pathways of Giardia lamblia
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title_short | Reconstruction of Sugar Metabolic Pathways of Giardia lamblia
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title_sort | reconstruction of sugar metabolic pathways of giardia lamblia |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483818/ https://www.ncbi.nlm.nih.gov/pubmed/23119161 http://dx.doi.org/10.1155/2012/980829 |
work_keys_str_mv | AT hanjian reconstructionofsugarmetabolicpathwaysofgiardialamblia AT collinslesleyj reconstructionofsugarmetabolicpathwaysofgiardialamblia |