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Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise

BACKGROUND: Cell-to-cell variability in protein expression can be large, and its propagation through signaling networks affects biological outcomes. Here, we apply deterministic and probabilistic models and biochemical measurements to study how network topologies and cell-to-cell protein abundance v...

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Autores principales: Birtwistle, Marc R, Rauch, Jens, Kiyatkin, Anatoly, Aksamitiene, Edita, Dobrzyński, Maciej, Hoek, Jan B, Kolch, Walter, Ogunnaike, Babatunde A, Kholodenko, Boris N
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3484110/
https://www.ncbi.nlm.nih.gov/pubmed/22920937
http://dx.doi.org/10.1186/1752-0509-6-109
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author Birtwistle, Marc R
Rauch, Jens
Kiyatkin, Anatoly
Aksamitiene, Edita
Dobrzyński, Maciej
Hoek, Jan B
Kolch, Walter
Ogunnaike, Babatunde A
Kholodenko, Boris N
author_facet Birtwistle, Marc R
Rauch, Jens
Kiyatkin, Anatoly
Aksamitiene, Edita
Dobrzyński, Maciej
Hoek, Jan B
Kolch, Walter
Ogunnaike, Babatunde A
Kholodenko, Boris N
author_sort Birtwistle, Marc R
collection PubMed
description BACKGROUND: Cell-to-cell variability in protein expression can be large, and its propagation through signaling networks affects biological outcomes. Here, we apply deterministic and probabilistic models and biochemical measurements to study how network topologies and cell-to-cell protein abundance variations interact to shape signaling responses. RESULTS: We observe bimodal distributions of extracellular signal-regulated kinase (ERK) responses to epidermal growth factor (EGF) stimulation, which are generally thought to indicate bistable or ultrasensitive signaling behavior in single cells. Surprisingly, we find that a simple MAPK/ERK-cascade model with negative feedback that displays graded, analog ERK responses at a single cell level can explain the experimentally observed bimodality at the cell population level. Model analysis suggests that a conversion of graded input–output responses in single cells to digital responses at the population level is caused by a broad distribution of ERK pathway activation thresholds brought about by cell-to-cell variability in protein expression. CONCLUSIONS: Our results show that bimodal signaling response distributions do not necessarily imply digital (ultrasensitive or bistable) single cell signaling, and the interplay between protein expression noise and network topologies can bring about digital population responses from analog single cell dose responses. Thus, cells can retain the benefits of robustness arising from negative feedback, while simultaneously generating population-level on/off responses that are thought to be critical for regulating cell fate decisions.
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spelling pubmed-34841102012-11-05 Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise Birtwistle, Marc R Rauch, Jens Kiyatkin, Anatoly Aksamitiene, Edita Dobrzyński, Maciej Hoek, Jan B Kolch, Walter Ogunnaike, Babatunde A Kholodenko, Boris N BMC Syst Biol Research Article BACKGROUND: Cell-to-cell variability in protein expression can be large, and its propagation through signaling networks affects biological outcomes. Here, we apply deterministic and probabilistic models and biochemical measurements to study how network topologies and cell-to-cell protein abundance variations interact to shape signaling responses. RESULTS: We observe bimodal distributions of extracellular signal-regulated kinase (ERK) responses to epidermal growth factor (EGF) stimulation, which are generally thought to indicate bistable or ultrasensitive signaling behavior in single cells. Surprisingly, we find that a simple MAPK/ERK-cascade model with negative feedback that displays graded, analog ERK responses at a single cell level can explain the experimentally observed bimodality at the cell population level. Model analysis suggests that a conversion of graded input–output responses in single cells to digital responses at the population level is caused by a broad distribution of ERK pathway activation thresholds brought about by cell-to-cell variability in protein expression. CONCLUSIONS: Our results show that bimodal signaling response distributions do not necessarily imply digital (ultrasensitive or bistable) single cell signaling, and the interplay between protein expression noise and network topologies can bring about digital population responses from analog single cell dose responses. Thus, cells can retain the benefits of robustness arising from negative feedback, while simultaneously generating population-level on/off responses that are thought to be critical for regulating cell fate decisions. BioMed Central 2012-08-24 /pmc/articles/PMC3484110/ /pubmed/22920937 http://dx.doi.org/10.1186/1752-0509-6-109 Text en Copyright ©2012 Birtwistle et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Birtwistle, Marc R
Rauch, Jens
Kiyatkin, Anatoly
Aksamitiene, Edita
Dobrzyński, Maciej
Hoek, Jan B
Kolch, Walter
Ogunnaike, Babatunde A
Kholodenko, Boris N
Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise
title Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise
title_full Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise
title_fullStr Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise
title_full_unstemmed Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise
title_short Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise
title_sort emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3484110/
https://www.ncbi.nlm.nih.gov/pubmed/22920937
http://dx.doi.org/10.1186/1752-0509-6-109
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