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Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise
BACKGROUND: Cell-to-cell variability in protein expression can be large, and its propagation through signaling networks affects biological outcomes. Here, we apply deterministic and probabilistic models and biochemical measurements to study how network topologies and cell-to-cell protein abundance v...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3484110/ https://www.ncbi.nlm.nih.gov/pubmed/22920937 http://dx.doi.org/10.1186/1752-0509-6-109 |
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author | Birtwistle, Marc R Rauch, Jens Kiyatkin, Anatoly Aksamitiene, Edita Dobrzyński, Maciej Hoek, Jan B Kolch, Walter Ogunnaike, Babatunde A Kholodenko, Boris N |
author_facet | Birtwistle, Marc R Rauch, Jens Kiyatkin, Anatoly Aksamitiene, Edita Dobrzyński, Maciej Hoek, Jan B Kolch, Walter Ogunnaike, Babatunde A Kholodenko, Boris N |
author_sort | Birtwistle, Marc R |
collection | PubMed |
description | BACKGROUND: Cell-to-cell variability in protein expression can be large, and its propagation through signaling networks affects biological outcomes. Here, we apply deterministic and probabilistic models and biochemical measurements to study how network topologies and cell-to-cell protein abundance variations interact to shape signaling responses. RESULTS: We observe bimodal distributions of extracellular signal-regulated kinase (ERK) responses to epidermal growth factor (EGF) stimulation, which are generally thought to indicate bistable or ultrasensitive signaling behavior in single cells. Surprisingly, we find that a simple MAPK/ERK-cascade model with negative feedback that displays graded, analog ERK responses at a single cell level can explain the experimentally observed bimodality at the cell population level. Model analysis suggests that a conversion of graded input–output responses in single cells to digital responses at the population level is caused by a broad distribution of ERK pathway activation thresholds brought about by cell-to-cell variability in protein expression. CONCLUSIONS: Our results show that bimodal signaling response distributions do not necessarily imply digital (ultrasensitive or bistable) single cell signaling, and the interplay between protein expression noise and network topologies can bring about digital population responses from analog single cell dose responses. Thus, cells can retain the benefits of robustness arising from negative feedback, while simultaneously generating population-level on/off responses that are thought to be critical for regulating cell fate decisions. |
format | Online Article Text |
id | pubmed-3484110 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-34841102012-11-05 Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise Birtwistle, Marc R Rauch, Jens Kiyatkin, Anatoly Aksamitiene, Edita Dobrzyński, Maciej Hoek, Jan B Kolch, Walter Ogunnaike, Babatunde A Kholodenko, Boris N BMC Syst Biol Research Article BACKGROUND: Cell-to-cell variability in protein expression can be large, and its propagation through signaling networks affects biological outcomes. Here, we apply deterministic and probabilistic models and biochemical measurements to study how network topologies and cell-to-cell protein abundance variations interact to shape signaling responses. RESULTS: We observe bimodal distributions of extracellular signal-regulated kinase (ERK) responses to epidermal growth factor (EGF) stimulation, which are generally thought to indicate bistable or ultrasensitive signaling behavior in single cells. Surprisingly, we find that a simple MAPK/ERK-cascade model with negative feedback that displays graded, analog ERK responses at a single cell level can explain the experimentally observed bimodality at the cell population level. Model analysis suggests that a conversion of graded input–output responses in single cells to digital responses at the population level is caused by a broad distribution of ERK pathway activation thresholds brought about by cell-to-cell variability in protein expression. CONCLUSIONS: Our results show that bimodal signaling response distributions do not necessarily imply digital (ultrasensitive or bistable) single cell signaling, and the interplay between protein expression noise and network topologies can bring about digital population responses from analog single cell dose responses. Thus, cells can retain the benefits of robustness arising from negative feedback, while simultaneously generating population-level on/off responses that are thought to be critical for regulating cell fate decisions. BioMed Central 2012-08-24 /pmc/articles/PMC3484110/ /pubmed/22920937 http://dx.doi.org/10.1186/1752-0509-6-109 Text en Copyright ©2012 Birtwistle et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Birtwistle, Marc R Rauch, Jens Kiyatkin, Anatoly Aksamitiene, Edita Dobrzyński, Maciej Hoek, Jan B Kolch, Walter Ogunnaike, Babatunde A Kholodenko, Boris N Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise |
title | Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise |
title_full | Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise |
title_fullStr | Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise |
title_full_unstemmed | Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise |
title_short | Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise |
title_sort | emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3484110/ https://www.ncbi.nlm.nih.gov/pubmed/22920937 http://dx.doi.org/10.1186/1752-0509-6-109 |
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