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Use of a Robot for High-throughput Crystallization of Membrane Proteins in Lipidic Mesophases

Structure-function studies of membrane proteins greatly benefit from having available high-resolution 3-D structures of the type provided through macromolecular X-ray crystallography (MX). An essential ingredient of MX is a steady supply of ideally diffraction-quality crystals. The in meso or lipidi...

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Autores principales: Li, Dianfan, Boland, Coilín, Walsh, Kilian, Caffrey, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MyJove Corporation 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3485062/
https://www.ncbi.nlm.nih.gov/pubmed/22971907
http://dx.doi.org/10.3791/4000
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author Li, Dianfan
Boland, Coilín
Walsh, Kilian
Caffrey, Martin
author_facet Li, Dianfan
Boland, Coilín
Walsh, Kilian
Caffrey, Martin
author_sort Li, Dianfan
collection PubMed
description Structure-function studies of membrane proteins greatly benefit from having available high-resolution 3-D structures of the type provided through macromolecular X-ray crystallography (MX). An essential ingredient of MX is a steady supply of ideally diffraction-quality crystals. The in meso or lipidic cubic phase (LCP) method for crystallizing membrane proteins is one of several methods available for crystallizing membrane proteins. It makes use of a bicontinuous mesophase in which to grow crystals. As a method, it has had some spectacular successes of late and has attracted much attention with many research groups now interested in using it. One of the challenges associated with the method is that the hosting mesophase is extremely viscous and sticky, reminiscent of a thick toothpaste. Thus, dispensing it manually in a reproducible manner in small volumes into crystallization wells requires skill, patience and a steady hand. A protocol for doing just that was developed in the Membrane Structural & Functional Biology (MS&FB) Group(1-3). JoVE video articles describing the method are available(1,4). The manual approach for setting up in meso trials has distinct advantages with specialty applications, such as crystal optimization and derivatization. It does however suffer from being a low throughput method. Here, we demonstrate a protocol for performing in meso crystallization trials robotically. A robot offers the advantages of speed, accuracy, precision, miniaturization and being able to work continuously for extended periods under what could be regarded as hostile conditions such as in the dark, in a reducing atmosphere or at low or high temperatures. An in meso robot, when used properly, can greatly improve the productivity of membrane protein structure and function research by facilitating crystallization which is one of the slow steps in the overall structure determination pipeline. In this video article, we demonstrate the use of three commercially available robots that can dispense the viscous and sticky mesophase integral to in meso crystallogenesis. The first robot was developed in the MS&FB Group(5,6). The other two have recently become available and are included here for completeness. An overview of the protocol covered in this article is presented in Figure 1. All manipulations were performed at room temperature (~20 °C) under ambient conditions.
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spelling pubmed-34850622012-11-01 Use of a Robot for High-throughput Crystallization of Membrane Proteins in Lipidic Mesophases Li, Dianfan Boland, Coilín Walsh, Kilian Caffrey, Martin J Vis Exp Materials Science Structure-function studies of membrane proteins greatly benefit from having available high-resolution 3-D structures of the type provided through macromolecular X-ray crystallography (MX). An essential ingredient of MX is a steady supply of ideally diffraction-quality crystals. The in meso or lipidic cubic phase (LCP) method for crystallizing membrane proteins is one of several methods available for crystallizing membrane proteins. It makes use of a bicontinuous mesophase in which to grow crystals. As a method, it has had some spectacular successes of late and has attracted much attention with many research groups now interested in using it. One of the challenges associated with the method is that the hosting mesophase is extremely viscous and sticky, reminiscent of a thick toothpaste. Thus, dispensing it manually in a reproducible manner in small volumes into crystallization wells requires skill, patience and a steady hand. A protocol for doing just that was developed in the Membrane Structural & Functional Biology (MS&FB) Group(1-3). JoVE video articles describing the method are available(1,4). The manual approach for setting up in meso trials has distinct advantages with specialty applications, such as crystal optimization and derivatization. It does however suffer from being a low throughput method. Here, we demonstrate a protocol for performing in meso crystallization trials robotically. A robot offers the advantages of speed, accuracy, precision, miniaturization and being able to work continuously for extended periods under what could be regarded as hostile conditions such as in the dark, in a reducing atmosphere or at low or high temperatures. An in meso robot, when used properly, can greatly improve the productivity of membrane protein structure and function research by facilitating crystallization which is one of the slow steps in the overall structure determination pipeline. In this video article, we demonstrate the use of three commercially available robots that can dispense the viscous and sticky mesophase integral to in meso crystallogenesis. The first robot was developed in the MS&FB Group(5,6). The other two have recently become available and are included here for completeness. An overview of the protocol covered in this article is presented in Figure 1. All manipulations were performed at room temperature (~20 °C) under ambient conditions. MyJove Corporation 2012-09-01 /pmc/articles/PMC3485062/ /pubmed/22971907 http://dx.doi.org/10.3791/4000 Text en Copyright © 2012, Journal of Visualized Experiments http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visithttp://creativecommons.org/licenses/by-nc-nd/3.0/
spellingShingle Materials Science
Li, Dianfan
Boland, Coilín
Walsh, Kilian
Caffrey, Martin
Use of a Robot for High-throughput Crystallization of Membrane Proteins in Lipidic Mesophases
title Use of a Robot for High-throughput Crystallization of Membrane Proteins in Lipidic Mesophases
title_full Use of a Robot for High-throughput Crystallization of Membrane Proteins in Lipidic Mesophases
title_fullStr Use of a Robot for High-throughput Crystallization of Membrane Proteins in Lipidic Mesophases
title_full_unstemmed Use of a Robot for High-throughput Crystallization of Membrane Proteins in Lipidic Mesophases
title_short Use of a Robot for High-throughput Crystallization of Membrane Proteins in Lipidic Mesophases
title_sort use of a robot for high-throughput crystallization of membrane proteins in lipidic mesophases
topic Materials Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3485062/
https://www.ncbi.nlm.nih.gov/pubmed/22971907
http://dx.doi.org/10.3791/4000
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