Cargando…

Genome-wide analysis reveals distinct patterns of epigenetic features in long non-coding RNA loci

A major fraction of the transcriptome of higher organisms comprised an extensive repertoire of long non-coding RNA (lncRNA) which express in a cell type and development stage-specific manner. While lncRNAs are a proven component of epigenetic gene expression modulation, epigenetic regulation of lncR...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sati, Satish, Ghosh, Sourav, Jain, Vaibhav, Scaria, Vinod, Sengupta, Shantanu
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2012
Materias:	Computational Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3488231/ https://www.ncbi.nlm.nih.gov/pubmed/22923516 http://dx.doi.org/10.1093/nar/gks776

Ejemplares similares

Comparative analysis of human mitochondrial methylome show distinct patterns of epigenetic regulation in mitochondria
por: Ghosh, Sourav, et al.
Publicado: (2014)

High Resolution Methylome Map of Rat Indicates Role of Intragenic DNA Methylation in Identification of Coding Region
por: Sati, Satish, et al.
Publicado: (2012)

lncRNome: a comprehensive knowledgebase of human long noncoding RNAs
por: Bhartiya, Deeksha, et al.
Publicado: (2013)

Epigenetic and genetic deregulation in cancer target distinct signaling pathway domains
por: Gao, Yang, et al.
Publicado: (2017)

Genome-wide study predicts promoter-G4 DNA motifs regulate selective functions in bacteria: radioresistance of D. radiodurans involves G4 DNA-mediated regulation
por: Beaume, Nicolas, et al.
Publicado: (2013)

Epigenetic and chromosomal features drive transposon insertion in Drosophila melanogaster
por: Cao, Jichuan, et al.
Publicado: (2023)

Distinct and Modular Organization of Protein Interacting Sites in Long Non-coding RNAs
por: Jalali, Saakshi, et al.
Publicado: (2018)

DNA methylation entropy is associated with DNA sequence features and developmental epigenetic divergence
por: Fang, Yuqi, et al.
Publicado: (2023)

A common set of distinct features that characterize noncoding RNAs across multiple species
por: Hu, Long, et al.
Publicado: (2015)

Distinct 3D contacts and phenotypic consequences of adjacent non-coding loci in the epigenetically quiescent regions
por: Wu, Peiyao, et al.
Publicado: (2023)

Transcriptome-wide expansion of non-coding regulatory switches: evidence from co-occurrence of Alu exonization, antisense and editing
por: Mandal, Amit K., et al.
Publicado: (2013)

Long non-coding RNA identification over mouse brain development by integrative modeling of chromatin and genomic features
por: Lv, Jie, et al.
Publicado: (2013)

Clojure high performance programming: become an expert at writing fast and high performant code in Clojure 1.7.0
por: Kumar, Shantanu
Publicado: (2015)

Quadruplex-single nucleotide polymorphisms (Quad-SNP) influence gene expression difference among individuals
por: Baral, Aradhita, et al.
Publicado: (2012)

Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells
por: Verma, Anjali, et al.
Publicado: (2009)

Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity
por: Wibowo, Anjar, et al.
Publicado: (2016)

Shaping epigenetic memory via genomic bookmarking
por: Michieletto, Davide, et al.
Publicado: (2018)

Castration delays epigenetic aging and feminizes DNA methylation at androgen-regulated loci
por: Sugrue, Victoria J, et al.
Publicado: (2021)

The structural code of cyanobacterial genomes
por: Lehmann, Robert, et al.
Publicado: (2014)

A large-scale benchmark study of tools for the classification of protein-coding and non-coding RNAs
por: Singh, Dalwinder, et al.
Publicado: (2022)

Long Non-Coding RNAs in Infection Biology
por: Scaria, Vinod, et al.
Publicado: (2013)

Patterns of methylation heritability in a genome-wide analysis of four brain regions
por: Quon, Gerald, et al.
Publicado: (2013)

Correction: Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity
por: Wibowo, Anjar, et al.
Publicado: (2018)

Epigenetic regulation of human cis-natural antisense transcripts
por: Conley, Andrew B., et al.
Publicado: (2012)

Modeling the relationship of epigenetic modifications to transcription factor binding
por: Liu, Liang, et al.
Publicado: (2015)

microRNAs in viral oncogenesis
por: Scaria, Vinod, et al.
Publicado: (2007)

Advances in feature selection for data and pattern recognition
por: Stańczyk, Urszula, et al.
Publicado: (2017)

Exploring advanced features in C#: enhance your code and productivity
por: Strauss, Dirk
Publicado: (2019)

Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture
por: Bouvy-Liivrand, Maria, et al.
Publicado: (2017)

Correction: Castration delays epigenetic aging and feminizes DNA methylation at androgen-regulated loci
por: Sugrue, Victoria J, et al.
Publicado: (2023)

Engineered reversal of drug resistance in cancer cells—metastases suppressor factors as change agents
por: Yadav, Vinod Kumar, et al.
Publicado: (2014)

A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers
por: Zhi, Hui, et al.
Publicado: (2014)

Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes
por: Alsing, Anne Katrine, et al.
Publicado: (2013)

Long non-coding RNAs as pan-cancer master gene regulators of associated protein-coding genes: a systems biology approach
por: Saleembhasha, Asanigari, et al.
Publicado: (2019)

Genome-wide analysis reveals positional-nucleosome-oriented binding pattern of pioneer factor FOXA1
por: Ye, Zhenqing, et al.
Publicado: (2016)

Adaptive code: agile coding with design patterns and SOLID principles
por: Hall, Gary McLean
Publicado: (2017)

Leveraging the Mendelian disorders of the epigenetic machinery to systematically map functional epigenetic variation
por: Luperchio, Teresa Romeo, et al.
Publicado: (2021)

The distinctive signatures of promoter regions and operon junctions across prokaryotes
por: Janga, Sarath Chandra, et al.
Publicado: (2006)

Genome-wide analysis of Alu editability
por: Bazak, Lily, et al.
Publicado: (2014)

Evolutionary pressures on simple sequence repeats in prokaryotic coding regions
por: Lin, Wei-Hsiang, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_gt85gfddpebnjtq2ej8n6bonks