Cargando…
Phylogenetic study of nine species of freshwater monogeneans using secondary structure and motif prediction from India
The present study was performed to identify and validate monogenean species from different piscine hosts using molecular tools. Nine species of freshwater monogeneans were collected from gills and skin of freshwater fishes at Hastinapur, Meerut, India. After microscopic examination, molecular analys...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3489091/ https://www.ncbi.nlm.nih.gov/pubmed/23144541 http://dx.doi.org/10.6026/97320630008862 |
_version_ | 1782248716399280128 |
---|---|
author | Chaudhary, Anshu Singh, Hridaya Shanker |
author_facet | Chaudhary, Anshu Singh, Hridaya Shanker |
author_sort | Chaudhary, Anshu |
collection | PubMed |
description | The present study was performed to identify and validate monogenean species from different piscine hosts using molecular tools. Nine species of freshwater monogeneans were collected from gills and skin of freshwater fishes at Hastinapur, Meerut, India. After microscopic examination, molecular analysis was performed utilizing 28S gene marker. Phylogenetic analysis indicated the validation and systematic position of these nine different monogeneans belongs to the Dactylogyridae and Gyrodactylidae families. The findings also confirm that the 28S rDNA sequence is highly conserved and may prove to be useful in taxonomic studies of parasitic platyhelminthes. Besides this, the study is also supplemented by molecular morphometrics that is based on 28S secondary structure homologies of nine monogenean species. The data indicate that 28S motifs i.e., ≤ 50bp in size can also be considered a promising tool for monogenean species identification and their validation. |
format | Online Article Text |
id | pubmed-3489091 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-34890912012-11-09 Phylogenetic study of nine species of freshwater monogeneans using secondary structure and motif prediction from India Chaudhary, Anshu Singh, Hridaya Shanker Bioinformation Hypothesis The present study was performed to identify and validate monogenean species from different piscine hosts using molecular tools. Nine species of freshwater monogeneans were collected from gills and skin of freshwater fishes at Hastinapur, Meerut, India. After microscopic examination, molecular analysis was performed utilizing 28S gene marker. Phylogenetic analysis indicated the validation and systematic position of these nine different monogeneans belongs to the Dactylogyridae and Gyrodactylidae families. The findings also confirm that the 28S rDNA sequence is highly conserved and may prove to be useful in taxonomic studies of parasitic platyhelminthes. Besides this, the study is also supplemented by molecular morphometrics that is based on 28S secondary structure homologies of nine monogenean species. The data indicate that 28S motifs i.e., ≤ 50bp in size can also be considered a promising tool for monogenean species identification and their validation. Biomedical Informatics 2012-09-21 /pmc/articles/PMC3489091/ /pubmed/23144541 http://dx.doi.org/10.6026/97320630008862 Text en © 2012 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited. |
spellingShingle | Hypothesis Chaudhary, Anshu Singh, Hridaya Shanker Phylogenetic study of nine species of freshwater monogeneans using secondary structure and motif prediction from India |
title | Phylogenetic study of nine species of freshwater monogeneans using secondary structure and motif prediction from India |
title_full | Phylogenetic study of nine species of freshwater monogeneans using secondary structure and motif prediction from India |
title_fullStr | Phylogenetic study of nine species of freshwater monogeneans using secondary structure and motif prediction from India |
title_full_unstemmed | Phylogenetic study of nine species of freshwater monogeneans using secondary structure and motif prediction from India |
title_short | Phylogenetic study of nine species of freshwater monogeneans using secondary structure and motif prediction from India |
title_sort | phylogenetic study of nine species of freshwater monogeneans using secondary structure and motif prediction from india |
topic | Hypothesis |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3489091/ https://www.ncbi.nlm.nih.gov/pubmed/23144541 http://dx.doi.org/10.6026/97320630008862 |
work_keys_str_mv | AT chaudharyanshu phylogeneticstudyofninespeciesoffreshwatermonogeneansusingsecondarystructureandmotifpredictionfromindia AT singhhridayashanker phylogeneticstudyofninespeciesoffreshwatermonogeneansusingsecondarystructureandmotifpredictionfromindia |