Cargando…

Molecular Dynamics Simulation of Rap1 Myb-type domain in Saccharomyces cerevisiae

Telomere is a nucleoprotein complex that plays important role in stability and their maintenance and consists of random repeats of species specific motifs. In budding Saccharomyces cerevisiae, Repressor Activator Protein 1 (Rap1) is a sequence specific protein that involved in transcriptional regula...

Descripción completa

Detalles Bibliográficos
Autores principales:	Mukherjee, Koel, Pandey, Dev Mani, Vidyarthi, Ambarish Saran
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Biomedical Informatics 2012
Materias:	Hypothesis
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3489094/ https://www.ncbi.nlm.nih.gov/pubmed/23144544 http://dx.doi.org/10.6026/97320630008881

Ejemplares similares

SVM based model generation for binding site prediction on helix turn helix motif type of transcription factors in eukaryotes
por: Mukherjee, Koel, et al.
Publicado: (2013)

Calculation of the relative metastabilities of proteins in subcellular compartments of Saccharomyces cerevisiae
por: Dick, Jeffrey M
Publicado: (2009)

Mobility in the structure of E.coli recQ helicase upon substrate binding as seen from molecular dynamics simulations
por: Pandey, Nishtha, et al.
Publicado: (2011)

Identification and annotation of abiotic stress responsive candidate genes in peanut ESTs
por: Kumari, Archana, et al.
Publicado: (2012)

In silico-prediction of downstream MYB interacting partners of MAPK3 in Arabidopsis
por: Giri, Priyanka, et al.
Publicado: (2014)

High temperature unfolding of Bacillus anthracis amidase-03 by molecular dynamics simulations
por: Sharma, Ravi Datta, et al.
Publicado: (2009)

Molecular dynamics simulation of a human thiopurine S-methyltransferase complexed with 6-mercaptopurine model
por: Mokmak, Wanwimon, et al.
Publicado: (2009)

Insights from the Molecular dynamics simulation of BcsD Subunit from K. xylinus
por: Kaur, Simranjit, et al.
Publicado: (2017)

Identification of conserved drought stress responsive gene-network across tissues and developmental stages in rice
por: Smita, Shuchi, et al.
Publicado: (2013)

Molecular modeling and molecular dynamics simulation study of the human Rab9 and RhoBTB3 C-terminus complex
por: Junaid, Muhammad, et al.
Publicado: (2014)

Insights from molecular modeling and dynamics simulation of pathogen resistance (R) protein from brinjal
por: Shrivastava, Dipty, et al.
Publicado: (2011)

Insights from molecular modeling, docking and simulation of imidazole nucleus containing chalcones with EGFR kinase domain for improved binding function
por: Rao, Gondu Eswara, et al.
Publicado: (2016)

The orientation of the C-terminal domain of the Saccharomyces cerevisiae Rap1 protein is determined by its binding to DNA
por: Matot, Béatrice, et al.
Publicado: (2012)

Screening of commercial cyclic peptide as inhibitor NS5 methyltransferase of Dengue virus through Molecular Docking and Molecular Dynamics Simulation
por: Tambunan, Usman Sumo Friend, et al.
Publicado: (2014)

Molecular dynamics simulation analysis of Focal Adhesive Kinase (FAK) docked with solanesol as an anti-cancer agent
por: Daneial, Betty, et al.
Publicado: (2017)

Insights from the docking and molecular dynamics simulation of the Phosphopantetheinyl transferase (PptT) structural model from Mycobacterium tuberculosis
por: Rohini, Karunakaran, et al.
Publicado: (2013)

Molecular dynamics simulation (MDS) analysis of Vibrio cholerae ToxT virulence factor complexed with docked potential inhibitors
por: Torktaz, Ibrahim, et al.
Publicado: (2018)

Insight into gene fusion from molecular dynamics simulation of fused and un-fused IGPS (Imidazole Glycerol Phosphate Synthetase)
por: Yiting, Yu, et al.
Publicado: (2006)

Structural study of biologically significant ligands with major birch pollen allergen Betv1 by docking and molecular dynamics simulation
por: Kundu, Sangeeta, et al.
Publicado: (2010)

Pharmacophore feature-based virtual screening for finding potent GSK-3 inhibitors using molecular docking and dynamics simulations
por: Chauhan, Navneet, et al.
Publicado: (2016)

Molecular modelling of the TSR domain of R-spondin 4
por: Ayadi, Leila
Publicado: (2008)

Homology modeling and molecular dynamics simulation of odonthubuthus doriae (Od1) scorpion toxin in comparison to the BmK M1
por: Karimi, Zahra, et al.
Publicado: (2012)

Structure prediction and molecular simulation of gases diffusion pathways in hydrogenase
por: Sundaram, Shanthy, et al.
Publicado: (2010)

Molecular dynamics simulation of complex Histones Deacetylase (HDAC) Class II Homo Sapiens with suberoylanilide hydroxamic acid (SAHA) and its derivatives as inhibitors of cervical cancer
por: Tambunan, Usman Sumo Friend, et al.
Publicado: (2013)

Molecular docking analysis of phytoconstituent from Momordica charantia with Guanylate Cyclase catalytic domain
por: Ghanta, Mohankrishna, et al.
Publicado: (2018)

Analysis of dimerization of BTB-IVR domains of Keap1 and its interaction with Cul3, by molecular modeling
por: Chauhan, Nandini, et al.
Publicado: (2013)

Molecular docking and simulation of Curcumin with Geranylgeranyl Transferase1 (GGTase1) and Farnesyl Transferase (FTase)
por: Subramani, Parasuraman Aiya, et al.
Publicado: (2015)

Molecular docking based screening of a simulated HIF-1 protein model for potential inhibitors
por: Latha, Mundla Sri, et al.
Publicado: (2017)

Molecular modeling and simulation of three important components of Plant Pathogen Interaction cascade in Vigna mungo
por: Singh, Pankaj Kumar, et al.
Publicado: (2017)

Homology modeling, active site prediction, and targeting the anti hypertension activity through molecular docking on endothelin – B receptor domain
por: Rayalu, Daddam Jayasimha, et al.
Publicado: (2012)

Molecular docking based screening of novel designed chalcone series of compounds for their anti-cancer activity targeting EGFR kinase domain
por: Rao, Chennu Maruthi Malya Prasada, et al.
Publicado: (2015)

The Enigmatic Conservation of a Rap1 Binding Site in the Saccharomyces cerevisiae HMR-E Silencer
por: Teytelman, Leonid, et al.
Publicado: (2012)

Context dependent function of the transcriptional regulator Rap1 in gene silencing and activation in Saccharomyces cerevisiae
por: Bondra, Eliana R, et al.
Publicado: (2023)

Context-dependent function of the transcriptional regulator Rap1 in gene silencing and activation in Saccharomyces cerevisiae
por: Bondra, Eliana R., et al.
Publicado: (2023)

Molecular model of thylakoid membrane bound (SlAPX6) ascorbate peroxidase from Solanum lycopersicum
por: Tripathi, Kaushlendra, et al.
Publicado: (2016)

Isoelectric points of multi-domain proteins
por: Carugo, Oliviero
Publicado: (2007)

An alignment-free domain architecture similarity search (ADASS) algorithm for inferring homology between multi-domain proteins
por: Syamaladevi, Divya P, et al.
Publicado: (2013)

Homology modeling, simulation and molecular docking studies of catechol-2, 3-Dioxygenase from Burkholderia cepacia: Involved in degradation of Petroleum hydrocarbons
por: Ajao, AT, et al.
Publicado: (2012)

Molecular modeling, docking and protein-protein interaction analysis of MAPK signalling cascade involved in Camalexin biosynthesis in Brassica rapa
por: Gaur, Manu, et al.
Publicado: (2018)

Length constraints of multidomain proteins in metazoans
por: Middleton, Sarah, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_110bk4inpga6qkdbgo581t60m3