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Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm
Identification of discrete states is a common task when studying biological systems on microscopic scales. Here, we present a novel step detection algorithm that is ideally suited to locate steplike features separating adjacent plateaus, even if they are smooth and hidden by noise. It can be adjuste...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3492383/ https://www.ncbi.nlm.nih.gov/pubmed/23144778 http://dx.doi.org/10.1371/journal.pone.0045896 |
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author | Opfer, Jan Gottschalk, Kay-Eberhard |
author_facet | Opfer, Jan Gottschalk, Kay-Eberhard |
author_sort | Opfer, Jan |
collection | PubMed |
description | Identification of discrete states is a common task when studying biological systems on microscopic scales. Here, we present a novel step detection algorithm that is ideally suited to locate steplike features separating adjacent plateaus, even if they are smooth and hidden by noise. It can be adjusted to detect very low or narrow steps that cannot be recognized by conventional methods. We demonstrate the applicability of the technique on various experimental data and show strong evidence of sub-10-pN steps in atomic force spectroscopy measurements performed with living lymphocytes. |
format | Online Article Text |
id | pubmed-3492383 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-34923832012-11-09 Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm Opfer, Jan Gottschalk, Kay-Eberhard PLoS One Research Article Identification of discrete states is a common task when studying biological systems on microscopic scales. Here, we present a novel step detection algorithm that is ideally suited to locate steplike features separating adjacent plateaus, even if they are smooth and hidden by noise. It can be adjusted to detect very low or narrow steps that cannot be recognized by conventional methods. We demonstrate the applicability of the technique on various experimental data and show strong evidence of sub-10-pN steps in atomic force spectroscopy measurements performed with living lymphocytes. Public Library of Science 2012-11-07 /pmc/articles/PMC3492383/ /pubmed/23144778 http://dx.doi.org/10.1371/journal.pone.0045896 Text en © 2012 Opfer, Gottschalk http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Opfer, Jan Gottschalk, Kay-Eberhard Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm |
title | Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm |
title_full | Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm |
title_fullStr | Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm |
title_full_unstemmed | Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm |
title_short | Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm |
title_sort | identifying discrete states of a biological system using a novel step detection algorithm |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3492383/ https://www.ncbi.nlm.nih.gov/pubmed/23144778 http://dx.doi.org/10.1371/journal.pone.0045896 |
work_keys_str_mv | AT opferjan identifyingdiscretestatesofabiologicalsystemusinganovelstepdetectionalgorithm AT gottschalkkayeberhard identifyingdiscretestatesofabiologicalsystemusinganovelstepdetectionalgorithm |