Cargando…

Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm

Identification of discrete states is a common task when studying biological systems on microscopic scales. Here, we present a novel step detection algorithm that is ideally suited to locate steplike features separating adjacent plateaus, even if they are smooth and hidden by noise. It can be adjuste...

Descripción completa

Detalles Bibliográficos
Autores principales: Opfer, Jan, Gottschalk, Kay-Eberhard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3492383/
https://www.ncbi.nlm.nih.gov/pubmed/23144778
http://dx.doi.org/10.1371/journal.pone.0045896
_version_ 1782249123399860224
author Opfer, Jan
Gottschalk, Kay-Eberhard
author_facet Opfer, Jan
Gottschalk, Kay-Eberhard
author_sort Opfer, Jan
collection PubMed
description Identification of discrete states is a common task when studying biological systems on microscopic scales. Here, we present a novel step detection algorithm that is ideally suited to locate steplike features separating adjacent plateaus, even if they are smooth and hidden by noise. It can be adjusted to detect very low or narrow steps that cannot be recognized by conventional methods. We demonstrate the applicability of the technique on various experimental data and show strong evidence of sub-10-pN steps in atomic force spectroscopy measurements performed with living lymphocytes.
format Online
Article
Text
id pubmed-3492383
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-34923832012-11-09 Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm Opfer, Jan Gottschalk, Kay-Eberhard PLoS One Research Article Identification of discrete states is a common task when studying biological systems on microscopic scales. Here, we present a novel step detection algorithm that is ideally suited to locate steplike features separating adjacent plateaus, even if they are smooth and hidden by noise. It can be adjusted to detect very low or narrow steps that cannot be recognized by conventional methods. We demonstrate the applicability of the technique on various experimental data and show strong evidence of sub-10-pN steps in atomic force spectroscopy measurements performed with living lymphocytes. Public Library of Science 2012-11-07 /pmc/articles/PMC3492383/ /pubmed/23144778 http://dx.doi.org/10.1371/journal.pone.0045896 Text en © 2012 Opfer, Gottschalk http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Opfer, Jan
Gottschalk, Kay-Eberhard
Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm
title Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm
title_full Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm
title_fullStr Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm
title_full_unstemmed Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm
title_short Identifying Discrete States of a Biological System Using a Novel Step Detection Algorithm
title_sort identifying discrete states of a biological system using a novel step detection algorithm
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3492383/
https://www.ncbi.nlm.nih.gov/pubmed/23144778
http://dx.doi.org/10.1371/journal.pone.0045896
work_keys_str_mv AT opferjan identifyingdiscretestatesofabiologicalsystemusinganovelstepdetectionalgorithm
AT gottschalkkayeberhard identifyingdiscretestatesofabiologicalsystemusinganovelstepdetectionalgorithm