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Testing Pairwise Association between Spatially Autocorrelated Variables: A New Approach Using Surrogate Lattice Data
BACKGROUND: Independence between observations is a standard prerequisite of traditional statistical tests of association. This condition is, however, violated when autocorrelation is present within the data. In the case of variables that are regularly sampled in space (i.e. lattice data or images),...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3492436/ https://www.ncbi.nlm.nih.gov/pubmed/23144961 http://dx.doi.org/10.1371/journal.pone.0048766 |
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author | Deblauwe, Vincent Kennel, Pol Couteron, Pierre |
author_facet | Deblauwe, Vincent Kennel, Pol Couteron, Pierre |
author_sort | Deblauwe, Vincent |
collection | PubMed |
description | BACKGROUND: Independence between observations is a standard prerequisite of traditional statistical tests of association. This condition is, however, violated when autocorrelation is present within the data. In the case of variables that are regularly sampled in space (i.e. lattice data or images), such as those provided by remote-sensing or geographical databases, this problem is particularly acute. Because analytic derivation of the null probability distribution of the test statistic (e.g. Pearson's r) is not always possible when autocorrelation is present, we propose instead the use of a Monte Carlo simulation with surrogate data. METHODOLOGY/PRINCIPAL FINDINGS: The null hypothesis that two observed mapped variables are the result of independent pattern generating processes is tested here by generating sets of random image data while preserving the autocorrelation function of the original images. Surrogates are generated by matching the dual-tree complex wavelet spectra (and hence the autocorrelation functions) of white noise images with the spectra of the original images. The generated images can then be used to build the probability distribution function of any statistic of association under the null hypothesis. We demonstrate the validity of a statistical test of association based on these surrogates with both actual and synthetic data and compare it with a corrected parametric test and three existing methods that generate surrogates (randomization, random rotations and shifts, and iterative amplitude adjusted Fourier transform). Type I error control was excellent, even with strong and long-range autocorrelation, which is not the case for alternative methods. CONCLUSIONS/SIGNIFICANCE: The wavelet-based surrogates are particularly appropriate in cases where autocorrelation appears at all scales or is direction-dependent (anisotropy). We explore the potential of the method for association tests involving a lattice of binary data and discuss its potential for validation of species distribution models. An implementation of the method in Java for the generation of wavelet-based surrogates is available online as supporting material. |
format | Online Article Text |
id | pubmed-3492436 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-34924362012-11-09 Testing Pairwise Association between Spatially Autocorrelated Variables: A New Approach Using Surrogate Lattice Data Deblauwe, Vincent Kennel, Pol Couteron, Pierre PLoS One Research Article BACKGROUND: Independence between observations is a standard prerequisite of traditional statistical tests of association. This condition is, however, violated when autocorrelation is present within the data. In the case of variables that are regularly sampled in space (i.e. lattice data or images), such as those provided by remote-sensing or geographical databases, this problem is particularly acute. Because analytic derivation of the null probability distribution of the test statistic (e.g. Pearson's r) is not always possible when autocorrelation is present, we propose instead the use of a Monte Carlo simulation with surrogate data. METHODOLOGY/PRINCIPAL FINDINGS: The null hypothesis that two observed mapped variables are the result of independent pattern generating processes is tested here by generating sets of random image data while preserving the autocorrelation function of the original images. Surrogates are generated by matching the dual-tree complex wavelet spectra (and hence the autocorrelation functions) of white noise images with the spectra of the original images. The generated images can then be used to build the probability distribution function of any statistic of association under the null hypothesis. We demonstrate the validity of a statistical test of association based on these surrogates with both actual and synthetic data and compare it with a corrected parametric test and three existing methods that generate surrogates (randomization, random rotations and shifts, and iterative amplitude adjusted Fourier transform). Type I error control was excellent, even with strong and long-range autocorrelation, which is not the case for alternative methods. CONCLUSIONS/SIGNIFICANCE: The wavelet-based surrogates are particularly appropriate in cases where autocorrelation appears at all scales or is direction-dependent (anisotropy). We explore the potential of the method for association tests involving a lattice of binary data and discuss its potential for validation of species distribution models. An implementation of the method in Java for the generation of wavelet-based surrogates is available online as supporting material. Public Library of Science 2012-11-07 /pmc/articles/PMC3492436/ /pubmed/23144961 http://dx.doi.org/10.1371/journal.pone.0048766 Text en © 2012 Deblauwe et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Deblauwe, Vincent Kennel, Pol Couteron, Pierre Testing Pairwise Association between Spatially Autocorrelated Variables: A New Approach Using Surrogate Lattice Data |
title | Testing Pairwise Association between Spatially Autocorrelated Variables: A New Approach Using Surrogate Lattice Data |
title_full | Testing Pairwise Association between Spatially Autocorrelated Variables: A New Approach Using Surrogate Lattice Data |
title_fullStr | Testing Pairwise Association between Spatially Autocorrelated Variables: A New Approach Using Surrogate Lattice Data |
title_full_unstemmed | Testing Pairwise Association between Spatially Autocorrelated Variables: A New Approach Using Surrogate Lattice Data |
title_short | Testing Pairwise Association between Spatially Autocorrelated Variables: A New Approach Using Surrogate Lattice Data |
title_sort | testing pairwise association between spatially autocorrelated variables: a new approach using surrogate lattice data |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3492436/ https://www.ncbi.nlm.nih.gov/pubmed/23144961 http://dx.doi.org/10.1371/journal.pone.0048766 |
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