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Similarities between protein folding and granular jamming

Grains and glasses, widely different materials, arrest their motions upon decreasing temperature and external load, respectively, in common ways, leading to a universal jamming phase diagram conjecture. However, unified theories are lacking, mainly because of the disparate nature of the particle int...

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Detalles Bibliográficos
Autores principales: Jose, Prasanth P, Andricioaei, Ioan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Pub. Group 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3493650/
https://www.ncbi.nlm.nih.gov/pubmed/23093180
http://dx.doi.org/10.1038/ncomms2177
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author Jose, Prasanth P
Andricioaei, Ioan
author_facet Jose, Prasanth P
Andricioaei, Ioan
author_sort Jose, Prasanth P
collection PubMed
description Grains and glasses, widely different materials, arrest their motions upon decreasing temperature and external load, respectively, in common ways, leading to a universal jamming phase diagram conjecture. However, unified theories are lacking, mainly because of the disparate nature of the particle interactions. Here we demonstrate that folded proteins exhibit signatures common to both glassiness and jamming by using temperature- and force-unfolding molecular dynamics simulations. Upon folding, proteins develop a peak in the interatomic force distributions that falls on a universal curve with experimentally measured forces on jammed grains and droplets. Dynamical signatures are found as a dramatic slowdown of stress relaxation upon folding. Together with granular similarities, folding is tied not just to the jamming transition, but a more nuanced picture of anisotropy, preparation protocol and internal interactions emerges. Results have implications for designing stable polymers and can open avenues to link protein folding to jamming theory.
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spelling pubmed-34936502012-11-09 Similarities between protein folding and granular jamming Jose, Prasanth P Andricioaei, Ioan Nat Commun Article Grains and glasses, widely different materials, arrest their motions upon decreasing temperature and external load, respectively, in common ways, leading to a universal jamming phase diagram conjecture. However, unified theories are lacking, mainly because of the disparate nature of the particle interactions. Here we demonstrate that folded proteins exhibit signatures common to both glassiness and jamming by using temperature- and force-unfolding molecular dynamics simulations. Upon folding, proteins develop a peak in the interatomic force distributions that falls on a universal curve with experimentally measured forces on jammed grains and droplets. Dynamical signatures are found as a dramatic slowdown of stress relaxation upon folding. Together with granular similarities, folding is tied not just to the jamming transition, but a more nuanced picture of anisotropy, preparation protocol and internal interactions emerges. Results have implications for designing stable polymers and can open avenues to link protein folding to jamming theory. Nature Pub. Group 2012-10-23 /pmc/articles/PMC3493650/ /pubmed/23093180 http://dx.doi.org/10.1038/ncomms2177 Text en Copyright © 2012, Macmillan Publishers LimitedNature Publishing Group, a division of http://creativecommons.org/licenses/by-nc-sa/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-Share Alike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/
spellingShingle Article
Jose, Prasanth P
Andricioaei, Ioan
Similarities between protein folding and granular jamming
title Similarities between protein folding and granular jamming
title_full Similarities between protein folding and granular jamming
title_fullStr Similarities between protein folding and granular jamming
title_full_unstemmed Similarities between protein folding and granular jamming
title_short Similarities between protein folding and granular jamming
title_sort similarities between protein folding and granular jamming
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3493650/
https://www.ncbi.nlm.nih.gov/pubmed/23093180
http://dx.doi.org/10.1038/ncomms2177
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