Cargando…

Evolutionarily consistent families in SCOP: sequence, structure and function

BACKGROUND: SCOP is a hierarchical domain classification system for proteins of known structure. The superfamily level has a clear definition: Protein domains belong to the same superfamily if there is structural, functional and sequence evidence for a common evolutionary ancestor. Superfamilies are...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pethica, Ralph B, Levitt, Michael, Gough, Julian
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3495643/ https://www.ncbi.nlm.nih.gov/pubmed/23078280 http://dx.doi.org/10.1186/1472-6807-12-27

Ejemplares similares

The SCOP database in 2020: expanded classification of representative family and superfamily domains of known protein structures
por: Andreeva, Antonina, et al.
Publicado: (2020)

S4: structure-based sequence alignments of SCOP superfamilies
por: Casbon, James, et al.
Publicado: (2005)

fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies
por: Tung, Chi-Hua, et al.
Publicado: (2007)

TreeVector: Scalable, Interactive, Phylogenetic Trees for the Web
por: Pethica, Ralph, et al.
Publicado: (2010)

Epicoccum nigrum-induced respiratory infection in a wild Eurasian scops owl (Otus scops)
por: RHIM, Haerin, et al.
Publicado: (2019)

Phaeomelanin matters: Redness associates with inter-individual differences in behaviour and feather corticosterone in male scops owls (Otus scops)
por: Cruz-Miralles, Ángel, et al.
Publicado: (2020)

Local Structural Differences in Homologous Proteins: Specificities in Different SCOP Classes
por: Joseph, Agnel Praveen, et al.
Publicado: (2012)

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains
por: Lewis, Tony E., et al.
Publicado: (2013)

SCOP2 prototype: a new approach to protein structure mining
por: Andreeva, Antonina, et al.
Publicado: (2014)

Lessons from making the Structural Classification of Proteins (SCOP) and their implications for protein structure modelling
por: Andreeva, Antonina
Publicado: (2016)

Diurnal variation in declarative memory and the involvement of SCOP in cognitive functions in nonhuman primates
por: Shimizu, Kimiko, et al.
Publicado: (2023)

Haemoproteus in barn and collared scops owls from Thailand
por: Salakij, Chaleow, et al.
Publicado: (2018)

A Network of SCOP Hidden Markov Models and Its Analysis
por: Zhang, Liqing, et al.
Publicado: (2011)

Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis
por: Csaba, Gergely, et al.
Publicado: (2009)

SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures
por: Fox, Naomi K., et al.
Publicado: (2014)

Data growth and its impact on the SCOP database: new developments
por: Andreeva, Antonina, et al.
Publicado: (2008)

SUPERFAMILY—sophisticated comparative genomics, data mining, visualization and phylogeny
por: Wilson, Derek, et al.
Publicado: (2009)

Structural Features and Immunomodulatory Effects of Water-Extractable Polysaccharides from Macrolepiota procera (Scop.) Singer
por: Georgiev, Yordan Nikolaev, et al.
Publicado: (2022)

A high level interface to SCOP and ASTRAL implemented in Python
por: Casbon, James A, et al.
Publicado: (2006)

Sanguisorba minor Scop.: An Overview of Its Phytochemistry and Biological Effects
por: Tocai (Moţoc), Alexandra Cristina, et al.
Publicado: (2023)

Evolutionarily new sequences expressed in tumors
por: Kozlov, Andrei P, et al.
Publicado: (2006)

PASS2 database for the structure-based sequence alignment of distantly related SCOP domain superfamilies: update to version 5 and added features
por: Gandhimathi, Arumugam, et al.
Publicado: (2016)

Modeling and structural analysis of evolutionarily diverse S8 family serine proteases
por: Laskar, Aparna, et al.
Publicado: (2011)

Genotoxic potential of Cotinus coggygria Scop. (Anacardiaceae) stem extract in vivo
por: Matic, Sanja, et al.
Publicado: (2011)

SUPERFAMILY 1.75 including a domain-centric gene ontology method
por: de Lima Morais, David A., et al.
Publicado: (2011)

Phytochemical Investigation and Therapeutical Potential of Cotinus coggygria Scop. in Alloxan-Induced Diabetic Mice
por: Rahman, Shahid, et al.
Publicado: (2022)

Isolation and Characterization of Microsatellite Markers for Cotinus coggygria Scop. (Anacardiaceae) by 454 Pyrosequencing
por: Wang, Wei, et al.
Publicado: (2014)

A daily-updated tree of (sequenced) life as a reference for genome research
por: Fang, Hai, et al.
Publicado: (2013)

Cotinus coggygria Scop.: An overview of its chemical constituents, pharmacological and toxicological potential
por: Matić, Sanja, et al.
Publicado: (2016)

UET: a database of evolutionarily-predicted functional determinants of protein sequences that cluster as functional sites in protein structures
por: Lua, Rhonald C., et al.
Publicado: (2016)

Ignorance can be evolutionarily beneficial
por: Field, Jared M., et al.
Publicado: (2017)

SCOP/PHLPP1β mediates circadian regulation of long-term recognition memory
por: Shimizu, Kimiko, et al.
Publicado: (2016)

Hydroponically Grown Sanguisorba minor Scop.: Effects of Cut and Storage on Fresh-Cut Produce
por: Ceccanti, Costanza, et al.
Publicado: (2019)

Endemic Cyprus Scops Owl Otus cyprius Readily Breeds in Artificial Nest Boxes
por: Iezekiel, Savvas, et al.
Publicado: (2021)

Evaluation of Polyphenolic Composition and Antimicrobial Properties of Sanguisorba officinalis L. and Sanguisorba minor Scop.
por: Tocai (Moţoc), Alexandra-Cristina, et al.
Publicado: (2022)

Phenological and Environmental Factors’ Impact on Secondary Metabolites in Medicinal Plant Cotinus coggygria Scop.
por: Ciocan, Alexandra-Gabriela, et al.
Publicado: (2023)

SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser
por: Walsh, Thomas P., et al.
Publicado: (2008)

An evolutionarily conserved RNA structure in the functional core of the lincRNA Cyrano
por: Jones, Alisha N., et al.
Publicado: (2020)

Mate choice for body size leads to size assortative mating in the Ryukyu Scops Owl Otus elegans
por: Sawada, Akira, et al.
Publicado: (2022)

Acute Physiology and Neurologic Outcomes after Brain Injury in SCOP/PHLPP1 KO Mice
por: Jackson, Travis C., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_75rshpbhj8hrkd829f6e98a904