A survey of current software for network analysis in molecular biology

Software for network motifs and modules is briefly reviewed, along with programs for network comparison. The three major software packages for network analysis, CYTOSCAPE, INGENUITY and PATHWAY STUDIO, and their associated databases, are compared in detail. A comparative test evaluated how these sof...

Descripción completa

Detalles Bibliográficos
Autores principales: Thomas, Sterling, Bonchev, Danail
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Software Review
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3500165/
https://www.ncbi.nlm.nih.gov/pubmed/20650822
http://dx.doi.org/10.1186/1479-7364-4-5-353
Descripción
Sumario:Software for network motifs and modules is briefly reviewed, along with programs for network comparison. The three major software packages for network analysis, CYTOSCAPE, INGENUITY and PATHWAY STUDIO, and their associated databases, are compared in detail. A comparative test evaluated how these software packages perform the search for key terms and the creation of network from those terms and from experimental expression data.

Ejemplares similares