A survey of current software for network analysis in molecular biology

Software for network motifs and modules is briefly reviewed, along with programs for network comparison. The three major software packages for network analysis, CYTOSCAPE, INGENUITY and PATHWAY STUDIO, and their associated databases, are compared in detail. A comparative test evaluated how these sof...

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Detalles Bibliográficos
Autores principales: Thomas, Sterling, Bonchev, Danail
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Software Review
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3500165/
https://www.ncbi.nlm.nih.gov/pubmed/20650822
http://dx.doi.org/10.1186/1479-7364-4-5-353
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author Thomas, Sterling
Bonchev, Danail
author_facet Thomas, Sterling
Bonchev, Danail
author_sort Thomas, Sterling
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description Software for network motifs and modules is briefly reviewed, along with programs for network comparison. The three major software packages for network analysis, CYTOSCAPE, INGENUITY and PATHWAY STUDIO, and their associated databases, are compared in detail. A comparative test evaluated how these software packages perform the search for key terms and the creation of network from those terms and from experimental expression data.
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spelling pubmed-35001652012-11-17 A survey of current software for network analysis in molecular biology Thomas, Sterling Bonchev, Danail Hum Genomics Software Review Software for network motifs and modules is briefly reviewed, along with programs for network comparison. The three major software packages for network analysis, CYTOSCAPE, INGENUITY and PATHWAY STUDIO, and their associated databases, are compared in detail. A comparative test evaluated how these software packages perform the search for key terms and the creation of network from those terms and from experimental expression data. BioMed Central 2010-06-01 /pmc/articles/PMC3500165/ /pubmed/20650822 http://dx.doi.org/10.1186/1479-7364-4-5-353 Text en Copyright ©2010 Henry Stewart Publications
spellingShingle Software Review
Thomas, Sterling
Bonchev, Danail
A survey of current software for network analysis in molecular biology
title A survey of current software for network analysis in molecular biology
title_full A survey of current software for network analysis in molecular biology
title_fullStr A survey of current software for network analysis in molecular biology
title_full_unstemmed A survey of current software for network analysis in molecular biology
title_short A survey of current software for network analysis in molecular biology
title_sort survey of current software for network analysis in molecular biology
topic Software Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3500165/
https://www.ncbi.nlm.nih.gov/pubmed/20650822
http://dx.doi.org/10.1186/1479-7364-4-5-353
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