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GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions
Protein-protein interactions are a key component of life processes. The knowledge of the three-dimensional structure of these interactions is important for understanding protein function. Genome-Wide Docking Database (http://gwidd.bioinformatics.ku.edu) offers an extensive source of data for structu...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3500202/ https://www.ncbi.nlm.nih.gov/pubmed/23245398 http://dx.doi.org/10.1186/1479-7364-6-7 |
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author | Kundrotas, Petras J Zhu, Zhengwei Vakser, Ilya A |
author_facet | Kundrotas, Petras J Zhu, Zhengwei Vakser, Ilya A |
author_sort | Kundrotas, Petras J |
collection | PubMed |
description | Protein-protein interactions are a key component of life processes. The knowledge of the three-dimensional structure of these interactions is important for understanding protein function. Genome-Wide Docking Database (http://gwidd.bioinformatics.ku.edu) offers an extensive source of data for structural studies of protein-protein complexes on genome scale. The current release of the database combines the available experimental data on the structure and characteristics of protein interactions with structural modeling of protein complexes for 771 organisms spanned over the entire universe of life from viruses to humans. The interactions are stored in a relational database with user-friendly interface that includes various search options. The search results can be interactively previewed; the structures, downloaded, along with the interaction characteristics. |
format | Online Article Text |
id | pubmed-3500202 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-35002022012-11-17 GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions Kundrotas, Petras J Zhu, Zhengwei Vakser, Ilya A Hum Genomics Review Protein-protein interactions are a key component of life processes. The knowledge of the three-dimensional structure of these interactions is important for understanding protein function. Genome-Wide Docking Database (http://gwidd.bioinformatics.ku.edu) offers an extensive source of data for structural studies of protein-protein complexes on genome scale. The current release of the database combines the available experimental data on the structure and characteristics of protein interactions with structural modeling of protein complexes for 771 organisms spanned over the entire universe of life from viruses to humans. The interactions are stored in a relational database with user-friendly interface that includes various search options. The search results can be interactively previewed; the structures, downloaded, along with the interaction characteristics. BioMed Central 2012-07-11 /pmc/articles/PMC3500202/ /pubmed/23245398 http://dx.doi.org/10.1186/1479-7364-6-7 Text en Copyright ©2012 Kundrotas et al.;licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Review Kundrotas, Petras J Zhu, Zhengwei Vakser, Ilya A GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions |
title | GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions |
title_full | GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions |
title_fullStr | GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions |
title_full_unstemmed | GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions |
title_short | GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions |
title_sort | gwidd: a comprehensive resource for genome-wide structural modeling of protein-protein interactions |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3500202/ https://www.ncbi.nlm.nih.gov/pubmed/23245398 http://dx.doi.org/10.1186/1479-7364-6-7 |
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