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How Should We Best Estimate the Mean Recency Duration for the BED Method?
BED estimates of HIV incidence from cross-sectional surveys are obtained by restricting, to fixed time T, the period over which incidence is estimated. The appropriate mean recency duration ([Image: see text]) then refers to the time where BED optical density (OD) is less than a pre-set cut-off C, g...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3500313/ https://www.ncbi.nlm.nih.gov/pubmed/23166743 http://dx.doi.org/10.1371/journal.pone.0049661 |
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author | Hargrove, John Eastwood, Hayden Mahiane, Guy van Schalkwyk, Cari |
author_facet | Hargrove, John Eastwood, Hayden Mahiane, Guy van Schalkwyk, Cari |
author_sort | Hargrove, John |
collection | PubMed |
description | BED estimates of HIV incidence from cross-sectional surveys are obtained by restricting, to fixed time T, the period over which incidence is estimated. The appropriate mean recency duration ([Image: see text]) then refers to the time where BED optical density (OD) is less than a pre-set cut-off C, given the patient has been HIV positive for at most time T. Five methods, tested using data for postpartum women in Zimbabwe, provided similar estimates of [Image: see text] for C = 0.8: i) The ratio (r/s) of the number of BED-recent infections to all seroconversions over T = 365 days: 192 days [95% CI 168–216]. ii) Linear mixed modeling (LMM): 191 days [95% CI 174–208]. iii) Non-linear mixed modeling (NLMM): 196 days [95% CrI 188–204]. iv) Survival analysis (SA): 192 days [95% CI 168–216]. Graphical analysis: 193 days. NLMM estimates of [Image: see text] - based on a biologically more appropriate functional relationship than LMM – resulted in best fits to OD data, the smallest variance in estimates of [Image: see text], and best correspondence between BED and follow-up estimates of HIV incidence, for the same subjects over the same time period. SA and NLMM produced very similar estimates of [Image: see text] but the coefficient of variation of the former was >3 times as high. The r/s method requires uniformly distributed seroconversion events but is useful if data are available only from a single follow-up. The graphical method produces the most variable results, involves unsound methodology and should not be used to provide estimates of [Image: see text]. False-recent rates increased as a quadratic function of C: for incidence estimation C should thus be chosen as small as possible, consistent with an adequate resultant number of recent cases, and accurate estimation of [Image: see text]. Inaccuracies in the estimation of [Image: see text] should not now provide an impediment to incidence estimation. |
format | Online Article Text |
id | pubmed-3500313 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-35003132012-11-19 How Should We Best Estimate the Mean Recency Duration for the BED Method? Hargrove, John Eastwood, Hayden Mahiane, Guy van Schalkwyk, Cari PLoS One Research Article BED estimates of HIV incidence from cross-sectional surveys are obtained by restricting, to fixed time T, the period over which incidence is estimated. The appropriate mean recency duration ([Image: see text]) then refers to the time where BED optical density (OD) is less than a pre-set cut-off C, given the patient has been HIV positive for at most time T. Five methods, tested using data for postpartum women in Zimbabwe, provided similar estimates of [Image: see text] for C = 0.8: i) The ratio (r/s) of the number of BED-recent infections to all seroconversions over T = 365 days: 192 days [95% CI 168–216]. ii) Linear mixed modeling (LMM): 191 days [95% CI 174–208]. iii) Non-linear mixed modeling (NLMM): 196 days [95% CrI 188–204]. iv) Survival analysis (SA): 192 days [95% CI 168–216]. Graphical analysis: 193 days. NLMM estimates of [Image: see text] - based on a biologically more appropriate functional relationship than LMM – resulted in best fits to OD data, the smallest variance in estimates of [Image: see text], and best correspondence between BED and follow-up estimates of HIV incidence, for the same subjects over the same time period. SA and NLMM produced very similar estimates of [Image: see text] but the coefficient of variation of the former was >3 times as high. The r/s method requires uniformly distributed seroconversion events but is useful if data are available only from a single follow-up. The graphical method produces the most variable results, involves unsound methodology and should not be used to provide estimates of [Image: see text]. False-recent rates increased as a quadratic function of C: for incidence estimation C should thus be chosen as small as possible, consistent with an adequate resultant number of recent cases, and accurate estimation of [Image: see text]. Inaccuracies in the estimation of [Image: see text] should not now provide an impediment to incidence estimation. Public Library of Science 2012-11-16 /pmc/articles/PMC3500313/ /pubmed/23166743 http://dx.doi.org/10.1371/journal.pone.0049661 Text en © 2012 Hargrove et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Hargrove, John Eastwood, Hayden Mahiane, Guy van Schalkwyk, Cari How Should We Best Estimate the Mean Recency Duration for the BED Method? |
title | How Should We Best Estimate the Mean Recency Duration for the BED Method? |
title_full | How Should We Best Estimate the Mean Recency Duration for the BED Method? |
title_fullStr | How Should We Best Estimate the Mean Recency Duration for the BED Method? |
title_full_unstemmed | How Should We Best Estimate the Mean Recency Duration for the BED Method? |
title_short | How Should We Best Estimate the Mean Recency Duration for the BED Method? |
title_sort | how should we best estimate the mean recency duration for the bed method? |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3500313/ https://www.ncbi.nlm.nih.gov/pubmed/23166743 http://dx.doi.org/10.1371/journal.pone.0049661 |
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