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Sequestration-based bistability enables tuning of the switching boundaries and design of a latch

Natural biological systems have evolved a diverse array of switches to realize their strategies for environmental response and development. Emerging applications of synthetic biology have begun to exploit such switches to achieve increasingly sophisticated designed behaviors. However, not all switch...

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Detalles Bibliográficos
Autores principales: Chen, David, Arkin, Adam P
Formato: Online Artículo Texto
Lenguaje:English
Publicado: European Molecular Biology Organization 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3501275/
https://www.ncbi.nlm.nih.gov/pubmed/23089683
http://dx.doi.org/10.1038/msb.2012.52
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author Chen, David
Arkin, Adam P
author_facet Chen, David
Arkin, Adam P
author_sort Chen, David
collection PubMed
description Natural biological systems have evolved a diverse array of switches to realize their strategies for environmental response and development. Emerging applications of synthetic biology have begun to exploit such switches to achieve increasingly sophisticated designed behaviors. However, not all switch architectures allow facile design of the switching and memory properties. Furthermore, not all designs are built from components for which large families of variants exist, a requirement for building many orthogonal switch variants. Therefore, there is a critical need from genetic engineers for scalable strategies that yield custom bistable switches. Here, we use a sigma factor and its cognate anti-sigma factor to experimentally verify that ultrasensitivity from sequestration combined with positive feedback is sufficient to build a bistable switch. We show that sequestration allows us to predictably tune the switching boundaries, and we can easily tune our switch to function as a set–reset latch that can be toggled between two states by a pulse of inducer input.
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spelling pubmed-35012752012-11-19 Sequestration-based bistability enables tuning of the switching boundaries and design of a latch Chen, David Arkin, Adam P Mol Syst Biol Report Natural biological systems have evolved a diverse array of switches to realize their strategies for environmental response and development. Emerging applications of synthetic biology have begun to exploit such switches to achieve increasingly sophisticated designed behaviors. However, not all switch architectures allow facile design of the switching and memory properties. Furthermore, not all designs are built from components for which large families of variants exist, a requirement for building many orthogonal switch variants. Therefore, there is a critical need from genetic engineers for scalable strategies that yield custom bistable switches. Here, we use a sigma factor and its cognate anti-sigma factor to experimentally verify that ultrasensitivity from sequestration combined with positive feedback is sufficient to build a bistable switch. We show that sequestration allows us to predictably tune the switching boundaries, and we can easily tune our switch to function as a set–reset latch that can be toggled between two states by a pulse of inducer input. European Molecular Biology Organization 2012-10-23 /pmc/articles/PMC3501275/ /pubmed/23089683 http://dx.doi.org/10.1038/msb.2012.52 Text en Copyright © 2012, EMBO and Macmillan Publishers Limited https://creativecommons.org/licenses/by-nc-sa/3.0/This is an open-access article distributed under the terms of the Creative Commons Attribution Noncommercial Share Alike 3.0 Unported License, which allows readers to alter, transform, or build upon the article and then distribute the resulting work under the same or similar license to this one. The work must be attributed back to the original author and commercial use is not permitted without specific permission.
spellingShingle Report
Chen, David
Arkin, Adam P
Sequestration-based bistability enables tuning of the switching boundaries and design of a latch
title Sequestration-based bistability enables tuning of the switching boundaries and design of a latch
title_full Sequestration-based bistability enables tuning of the switching boundaries and design of a latch
title_fullStr Sequestration-based bistability enables tuning of the switching boundaries and design of a latch
title_full_unstemmed Sequestration-based bistability enables tuning of the switching boundaries and design of a latch
title_short Sequestration-based bistability enables tuning of the switching boundaries and design of a latch
title_sort sequestration-based bistability enables tuning of the switching boundaries and design of a latch
topic Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3501275/
https://www.ncbi.nlm.nih.gov/pubmed/23089683
http://dx.doi.org/10.1038/msb.2012.52
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