Cargando…

Detection of Glutamic Acid in Oilseed Rape Leaves Using Near Infrared Spectroscopy and the Least Squares-Support Vector Machine

Amino acids are quite important indices to indicate the growth status of oilseed rape under herbicide stress. Near infrared (NIR) spectroscopy combined with chemometrics was applied for fast determination of glutamic acid in oilseed rape leaves. The optimal spectral preprocessing method was obtained...

Descripción completa

Detalles Bibliográficos
Autores principales: Bao, Yidan, Kong, Wenwen, Liu, Fei, Qiu, Zhengjun, He, Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Molecular Diversity Preservation International (MDPI) 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3509568/
https://www.ncbi.nlm.nih.gov/pubmed/23203052
http://dx.doi.org/10.3390/ijms131114106
_version_ 1782251357009346560
author Bao, Yidan
Kong, Wenwen
Liu, Fei
Qiu, Zhengjun
He, Yong
author_facet Bao, Yidan
Kong, Wenwen
Liu, Fei
Qiu, Zhengjun
He, Yong
author_sort Bao, Yidan
collection PubMed
description Amino acids are quite important indices to indicate the growth status of oilseed rape under herbicide stress. Near infrared (NIR) spectroscopy combined with chemometrics was applied for fast determination of glutamic acid in oilseed rape leaves. The optimal spectral preprocessing method was obtained after comparing Savitzky-Golay smoothing, standard normal variate, multiplicative scatter correction, first and second derivatives, detrending and direct orthogonal signal correction. Linear and nonlinear calibration methods were developed, including partial least squares (PLS) and least squares-support vector machine (LS-SVM). The most effective wavelengths (EWs) were determined by the successive projections algorithm (SPA), and these wavelengths were used as the inputs of PLS and LS-SVM model. The best prediction results were achieved by SPA-LS-SVM (Raw) model with correlation coefficient r = 0.9943 and root mean squares error of prediction (RMSEP) = 0.0569 for prediction set. These results indicated that NIR spectroscopy combined with SPA-LS-SVM was feasible for the fast and effective detection of glutamic acid in oilseed rape leaves. The selected EWs could be used to develop spectral sensors, and the important and basic amino acid data were helpful to study the function mechanism of herbicide.
format Online
Article
Text
id pubmed-3509568
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher Molecular Diversity Preservation International (MDPI)
record_format MEDLINE/PubMed
spelling pubmed-35095682013-01-09 Detection of Glutamic Acid in Oilseed Rape Leaves Using Near Infrared Spectroscopy and the Least Squares-Support Vector Machine Bao, Yidan Kong, Wenwen Liu, Fei Qiu, Zhengjun He, Yong Int J Mol Sci Article Amino acids are quite important indices to indicate the growth status of oilseed rape under herbicide stress. Near infrared (NIR) spectroscopy combined with chemometrics was applied for fast determination of glutamic acid in oilseed rape leaves. The optimal spectral preprocessing method was obtained after comparing Savitzky-Golay smoothing, standard normal variate, multiplicative scatter correction, first and second derivatives, detrending and direct orthogonal signal correction. Linear and nonlinear calibration methods were developed, including partial least squares (PLS) and least squares-support vector machine (LS-SVM). The most effective wavelengths (EWs) were determined by the successive projections algorithm (SPA), and these wavelengths were used as the inputs of PLS and LS-SVM model. The best prediction results were achieved by SPA-LS-SVM (Raw) model with correlation coefficient r = 0.9943 and root mean squares error of prediction (RMSEP) = 0.0569 for prediction set. These results indicated that NIR spectroscopy combined with SPA-LS-SVM was feasible for the fast and effective detection of glutamic acid in oilseed rape leaves. The selected EWs could be used to develop spectral sensors, and the important and basic amino acid data were helpful to study the function mechanism of herbicide. Molecular Diversity Preservation International (MDPI) 2012-10-31 /pmc/articles/PMC3509568/ /pubmed/23203052 http://dx.doi.org/10.3390/ijms131114106 Text en © 2012 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0 This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0).
spellingShingle Article
Bao, Yidan
Kong, Wenwen
Liu, Fei
Qiu, Zhengjun
He, Yong
Detection of Glutamic Acid in Oilseed Rape Leaves Using Near Infrared Spectroscopy and the Least Squares-Support Vector Machine
title Detection of Glutamic Acid in Oilseed Rape Leaves Using Near Infrared Spectroscopy and the Least Squares-Support Vector Machine
title_full Detection of Glutamic Acid in Oilseed Rape Leaves Using Near Infrared Spectroscopy and the Least Squares-Support Vector Machine
title_fullStr Detection of Glutamic Acid in Oilseed Rape Leaves Using Near Infrared Spectroscopy and the Least Squares-Support Vector Machine
title_full_unstemmed Detection of Glutamic Acid in Oilseed Rape Leaves Using Near Infrared Spectroscopy and the Least Squares-Support Vector Machine
title_short Detection of Glutamic Acid in Oilseed Rape Leaves Using Near Infrared Spectroscopy and the Least Squares-Support Vector Machine
title_sort detection of glutamic acid in oilseed rape leaves using near infrared spectroscopy and the least squares-support vector machine
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3509568/
https://www.ncbi.nlm.nih.gov/pubmed/23203052
http://dx.doi.org/10.3390/ijms131114106
work_keys_str_mv AT baoyidan detectionofglutamicacidinoilseedrapeleavesusingnearinfraredspectroscopyandtheleastsquaressupportvectormachine
AT kongwenwen detectionofglutamicacidinoilseedrapeleavesusingnearinfraredspectroscopyandtheleastsquaressupportvectormachine
AT liufei detectionofglutamicacidinoilseedrapeleavesusingnearinfraredspectroscopyandtheleastsquaressupportvectormachine
AT qiuzhengjun detectionofglutamicacidinoilseedrapeleavesusingnearinfraredspectroscopyandtheleastsquaressupportvectormachine
AT heyong detectionofglutamicacidinoilseedrapeleavesusingnearinfraredspectroscopyandtheleastsquaressupportvectormachine