Cargando…

Predicting Retention Times of Naturally Occurring Phenolic Compounds in Reversed-Phase Liquid Chromatography: A Quantitative Structure-Retention Relationship (QSRR) Approach

Quantitative structure-retention relationships (QSRRs) have successfully been developed for naturally occurring phenolic compounds in a reversed-phase liquid chromatographic (RPLC) system. A total of 1519 descriptors were calculated from the optimized structures of the molecules using MOPAC2009 and...

Descripción completa

Detalles Bibliográficos
Autores principales: Akbar, Jamshed, Iqbal, Shahid, Batool, Fozia, Karim, Abdul, Chan, Kim Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Molecular Diversity Preservation International (MDPI) 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3509648/
https://www.ncbi.nlm.nih.gov/pubmed/23203132
http://dx.doi.org/10.3390/ijms131115387
_version_ 1782251375664562176
author Akbar, Jamshed
Iqbal, Shahid
Batool, Fozia
Karim, Abdul
Chan, Kim Wei
author_facet Akbar, Jamshed
Iqbal, Shahid
Batool, Fozia
Karim, Abdul
Chan, Kim Wei
author_sort Akbar, Jamshed
collection PubMed
description Quantitative structure-retention relationships (QSRRs) have successfully been developed for naturally occurring phenolic compounds in a reversed-phase liquid chromatographic (RPLC) system. A total of 1519 descriptors were calculated from the optimized structures of the molecules using MOPAC2009 and DRAGON softwares. The data set of 39 molecules was divided into training and external validation sets. For feature selection and mapping we used step-wise multiple linear regression (SMLR), unsupervised forward selection followed by step-wise multiple linear regression (UFS-SMLR) and artificial neural networks (ANN). Stable and robust models with significant predictive abilities in terms of validation statistics were obtained with negation of any chance correlation. ANN models were found better than remaining two approaches. HNar, IDM, Mp, GATS2v, DISP and 3D-MoRSE (signals 22, 28 and 32) descriptors based on van der Waals volume, electronegativity, mass and polarizability, at atomic level, were found to have significant effects on the retention times. The possible implications of these descriptors in RPLC have been discussed. All the models are proven to be quite able to predict the retention times of phenolic compounds and have shown remarkable validation, robustness, stability and predictive performance.
format Online
Article
Text
id pubmed-3509648
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher Molecular Diversity Preservation International (MDPI)
record_format MEDLINE/PubMed
spelling pubmed-35096482013-01-09 Predicting Retention Times of Naturally Occurring Phenolic Compounds in Reversed-Phase Liquid Chromatography: A Quantitative Structure-Retention Relationship (QSRR) Approach Akbar, Jamshed Iqbal, Shahid Batool, Fozia Karim, Abdul Chan, Kim Wei Int J Mol Sci Article Quantitative structure-retention relationships (QSRRs) have successfully been developed for naturally occurring phenolic compounds in a reversed-phase liquid chromatographic (RPLC) system. A total of 1519 descriptors were calculated from the optimized structures of the molecules using MOPAC2009 and DRAGON softwares. The data set of 39 molecules was divided into training and external validation sets. For feature selection and mapping we used step-wise multiple linear regression (SMLR), unsupervised forward selection followed by step-wise multiple linear regression (UFS-SMLR) and artificial neural networks (ANN). Stable and robust models with significant predictive abilities in terms of validation statistics were obtained with negation of any chance correlation. ANN models were found better than remaining two approaches. HNar, IDM, Mp, GATS2v, DISP and 3D-MoRSE (signals 22, 28 and 32) descriptors based on van der Waals volume, electronegativity, mass and polarizability, at atomic level, were found to have significant effects on the retention times. The possible implications of these descriptors in RPLC have been discussed. All the models are proven to be quite able to predict the retention times of phenolic compounds and have shown remarkable validation, robustness, stability and predictive performance. Molecular Diversity Preservation International (MDPI) 2012-11-20 /pmc/articles/PMC3509648/ /pubmed/23203132 http://dx.doi.org/10.3390/ijms131115387 Text en © 2012 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0 This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0).
spellingShingle Article
Akbar, Jamshed
Iqbal, Shahid
Batool, Fozia
Karim, Abdul
Chan, Kim Wei
Predicting Retention Times of Naturally Occurring Phenolic Compounds in Reversed-Phase Liquid Chromatography: A Quantitative Structure-Retention Relationship (QSRR) Approach
title Predicting Retention Times of Naturally Occurring Phenolic Compounds in Reversed-Phase Liquid Chromatography: A Quantitative Structure-Retention Relationship (QSRR) Approach
title_full Predicting Retention Times of Naturally Occurring Phenolic Compounds in Reversed-Phase Liquid Chromatography: A Quantitative Structure-Retention Relationship (QSRR) Approach
title_fullStr Predicting Retention Times of Naturally Occurring Phenolic Compounds in Reversed-Phase Liquid Chromatography: A Quantitative Structure-Retention Relationship (QSRR) Approach
title_full_unstemmed Predicting Retention Times of Naturally Occurring Phenolic Compounds in Reversed-Phase Liquid Chromatography: A Quantitative Structure-Retention Relationship (QSRR) Approach
title_short Predicting Retention Times of Naturally Occurring Phenolic Compounds in Reversed-Phase Liquid Chromatography: A Quantitative Structure-Retention Relationship (QSRR) Approach
title_sort predicting retention times of naturally occurring phenolic compounds in reversed-phase liquid chromatography: a quantitative structure-retention relationship (qsrr) approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3509648/
https://www.ncbi.nlm.nih.gov/pubmed/23203132
http://dx.doi.org/10.3390/ijms131115387
work_keys_str_mv AT akbarjamshed predictingretentiontimesofnaturallyoccurringphenoliccompoundsinreversedphaseliquidchromatographyaquantitativestructureretentionrelationshipqsrrapproach
AT iqbalshahid predictingretentiontimesofnaturallyoccurringphenoliccompoundsinreversedphaseliquidchromatographyaquantitativestructureretentionrelationshipqsrrapproach
AT batoolfozia predictingretentiontimesofnaturallyoccurringphenoliccompoundsinreversedphaseliquidchromatographyaquantitativestructureretentionrelationshipqsrrapproach
AT karimabdul predictingretentiontimesofnaturallyoccurringphenoliccompoundsinreversedphaseliquidchromatographyaquantitativestructureretentionrelationshipqsrrapproach
AT chankimwei predictingretentiontimesofnaturallyoccurringphenoliccompoundsinreversedphaseliquidchromatographyaquantitativestructureretentionrelationshipqsrrapproach